| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3769 |
|---|
| Symbol | rplA |
|---|
| ID | 5081049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 4376532 |
|---|
| End bp | 4377233 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640500978 |
|---|
| Product | 50S ribosomal protein L1 |
|---|
| Protein accession | YP_001185275 |
|---|
| Protein GI | 146294851 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0081] Ribosomal protein L1 |
|---|
| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000012914 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAC TAACTAAACG CATGCGCGTA ATTCGCGAGA AAGTTGACGG TACTAAATTA
TACGAAATCA ACGATGCTGT TGCTCTGTTA AAAGAATTAG CAACTGCAAA GTTTGTTGAA
AGTGTAGACG TAGCAGTTAA CTTGGGTATT GACCCACGTA AATCTGACCA AAACGTTCGT
GGTGCAACTG TGTTACCACA CGGTACTGGT CGTGACGTTC GCGTTGCAGT ATTTACACAA
GGTGCAAATG CTGAAGCCGC TAAAGCTGCT GGTGCTGAGC TTGTTGGTAT GGATGATCTG
GCTGAGCAAA TCAAAGCTGG TGAAATGAAC TTTGACGTTG TTATCGCATC TCCAGATGCA
ATGCGCGTTG TTGGTATGTT AGGTCAAATC TTAGGCCCAC GTGGTTTAAT GCCTAACCCT
AAAACAGGTA CAGTAACACC AAACGTTGCT GAAGCTGTTA AGAATGCCAA GGCTGGTCAA
GTTCGTTATC GTAACGACAA GAACGGTATT ATCCACACTA CTATCGGTAA AGTGGATTTC
ACACCAGTTC AGTTGAAAGA AAACTTGGAA GCGTTAATCT CTGCACTGAA AAAGGCTAAG
CCTGCAGTTG CTAAAGGTGT ATACGTGAAG AAAGTAAGCA TCTCCACCAC TATGGGTGCA
GGTGTTGCTG TCGACCAAGC GACTCTCGAT ACAGCTAACT AA
|
|---|
| Protein sequence | MAKLTKRMRV IREKVDGTKL YEINDAVALL KELATAKFVE SVDVAVNLGI DPRKSDQNVR
GATVLPHGTG RDVRVAVFTQ GANAEAAKAA GAELVGMDDL AEQIKAGEMN FDVVIASPDA
MRVVGMLGQI LGPRGLMPNP KTGTVTPNVA EAVKNAKAGQ VRYRNDKNGI IHTTIGKVDF
TPVQLKENLE ALISALKKAK PAVAKGVYVK KVSISTTMGA GVAVDQATLD TAN
|
|---|
| |