Gene Sputcn32_3734 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_3734 
Symbol 
ID5079121 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand- 
Start bp4348713 
End bp4349702 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content48% 
IMG OID640500943 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_001185240 
Protein GI146294816 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0011078 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGGGTT CTGTTACAGA ATTTCTTAAA CCGCGTCTCG TTGATATCGA GCAGGTTAAC 
TCAACACGTG CCAAGGTTAC ATTGGAACCA CTTGAGCGTG GTTTCGGCCA CACTTTAGGT 
AACGCGTTGC GTCGCATCCT ATTGTCGTCT ATGCCCGGCT GCGCGGTTAC CGAAGTCGAG 
ATTGACGGTG TACTGCACGA ATACAGCAGT AAGGAAGGCG TACAAGAAGA TATCCTTGAG 
ATCTTGTTAA ACCTGAAAGG GTTAGCAGTG ACTATCGAGG GTAAAGACGA GGCTATGCTT 
ACGTTGAGCA AGTCCGGCGC AGGCCCTGTC ATCGCAGCAG ATATCACGCA TGATGGTGAT 
GTCACTATCG TGAATCCTGA TCATGTTATC TGTCATTTGA CGGGTAACAA TGATATCAGC 
ATGCGTATTC GCGTTGAGCG TGGTCGTGGT TATGTGCCAG CATCTGCTCG TGCACAGACC 
GAAGACGATG ATCGCCCAAT CGGCCGTTTG CTGGTTGATG CTTCTTTCTC GCCAGTTGCA 
CGTATTGCCT ACAATGTAGA AGCAGCTCGT GTTGAACAGC GTACTGACTT GGATAAACTT 
GTTATCGATA TGACCACTAA TGGTACTATC GATCCTGAGG AAGCTATCCG TCGTTCCGCA 
ACTATTTTAG CTGAACAGCT AGATGCGTTT GTTGAGCTGC GTGACGTGAC TGAGCCAGAA 
TTGAAAGAAG AGAAGCCGGA GTTCGATCCG ATTCTGTTGC GTCCTGTCGA CGATTTAGAG 
CTAACTGTAC GTTCGGCTAA CTGCTTGAAA GCCGAAGCGA TTCATTACAT CGGAGATCTG 
GTACAGCGTA CTGAAGTTGA GCTGCTGAAG ACCCCTAACT TAGGTAAGAA ATCTCTTACA 
GAAATTAAGG ACGTTTTGGC TTCTCGCGGA CTGTCGTTAG GTATGCGTTT GGAAAACTGG 
CCTCCAGCCA GTTTAGCAGA CGACCTATAA
 
Protein sequence
MQGSVTEFLK PRLVDIEQVN STRAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE 
IDGVLHEYSS KEGVQEDILE ILLNLKGLAV TIEGKDEAML TLSKSGAGPV IAADITHDGD 
VTIVNPDHVI CHLTGNNDIS MRIRVERGRG YVPASARAQT EDDDRPIGRL LVDASFSPVA 
RIAYNVEAAR VEQRTDLDKL VIDMTTNGTI DPEEAIRRSA TILAEQLDAF VELRDVTEPE 
LKEEKPEFDP ILLRPVDDLE LTVRSANCLK AEAIHYIGDL VQRTEVELLK TPNLGKKSLT 
EIKDVLASRG LSLGMRLENW PPASLADDL