| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3644 |
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| Symbol | prpB |
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| ID | 5078934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 4247262 |
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| End bp | 4248140 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640500850 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_001185151 |
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| Protein GI | 146294727 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAAA GCGCAGGATT ACGTTTTCGC CAAGCTCTTG CTAAGGCCAA ACCGTTACAA
ATCGTTGGCA CCACCAATGC CTATTTTGCC TTAATGGCAG AGCAAACTGG CTTCCAAGCC
TTGTATCTTT CGGGCGCTGG CGTTGCCAAT GCTTCCTACG GTTTGCCTGA CTTGGGCATG
ACCTCAATGA ATGACGTGCT GATTGATGCC GGCCGCATCA CCTCTGCCAC GCAGGTGCCT
TTATTGGTCG ATATCGATAC TGGCTGGGGC GGCGCATTCA ATATTGCTCG TACCATCAAA
GAATTCGAAA AAATCGGCGT CGCTGCAGTG CACATGGAAG ACCAAGTGTC GCAAAAGCGT
TGCGGCCACA GACCCAACAA AGCAGTTGTG AGCATTGAAG AAATGGTCGA TCGCATTAAA
GCGGCCGTCG ATGCCCGTAC CGATCCTAAC TTTGTGATCA TGGCGCGTAC CGATGCGGTT
GCCGTGGAAG GTTTAGAAGC GGGTATTGAA CGTGCGCAAG CGTATATTGC CGCCGGCGCC
GACATGATCT TCGCCGAAGC CTTAACTGAG CTAGACCAAT ATCGCCACTT CAAGGCTCAA
GTTAAAGCAC CAATTTTGGC CAACATGACT GAATTTGGTC AAACCCAATT GTTCAATAAA
GAAGAACTCG CCGAGGCGGG TGCCGACATG GTGCTCTACC CACTCGGTAC TTTCCGTGCA
GCCAACCAAG CCGCACTGAA CGTCATGCAA GCGCTGATGA ATGATGGTCA TCAACGCAAT
GTGCTAGACA CTATGCAAAC CCGTAAAGAC TTGTATAAAT ACTTGGGCTA CCACGCCTTT
GAAGACAAGT TAGATCAACT GTTCAGCCAA GATAAATAA
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| Protein sequence | MTQSAGLRFR QALAKAKPLQ IVGTTNAYFA LMAEQTGFQA LYLSGAGVAN ASYGLPDLGM
TSMNDVLIDA GRITSATQVP LLVDIDTGWG GAFNIARTIK EFEKIGVAAV HMEDQVSQKR
CGHRPNKAVV SIEEMVDRIK AAVDARTDPN FVIMARTDAV AVEGLEAGIE RAQAYIAAGA
DMIFAEALTE LDQYRHFKAQ VKAPILANMT EFGQTQLFNK EELAEAGADM VLYPLGTFRA
ANQAALNVMQ ALMNDGHQRN VLDTMQTRKD LYKYLGYHAF EDKLDQLFSQ DK
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