Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_3598 |
Symbol | |
ID | 5078838 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 4191716 |
End bp | 4194349 |
Gene Length | 2634 bp |
Protein Length | 877 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640500804 |
Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
Protein accession | YP_001185105 |
Protein GI | 146294681 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTAAGG ATGAAGATGA AACTACGCAA TCGTCGACTC TTAGGGTTGA ACGCTTAAAA AAAAGAATTA TCCGCTTAAA ATATTTAGCG CATAAGTATA AGCGTGCCGA AATCATCCAG AATGCCCTAC TTGAGTTATC GAATATCGCG ACTCAAGTTT CCTCATTAGA AGAATTCTAT GTAGGTGTAC ATCAACACTT AAAACAACTG ATCTCCGCTG ACAACTTTTT TATCGCTACT CTCGATGTCG CTTCAGGCAC AATCGCTGTT CCTTTTTTTG CCGATGAAAA AGATGCTCAT CCCGCACAAC TTTATCCAGA GGAATCACTC TCTACTTTAT TGCAGCAGGG ATTAACAGGG TACGTATTCA GAACGGGTAG AGCACTCCTG TGTGACAATG ATAAAGTTGA TGAGCTCATC GCGGCAGGTG AGATAGTGAA CCTAGGTTCA CCCTGCCACC TATGGCTCGG AGTGCCCATT AAACACGATG GTATAATGAC TGGTGTATTA GTCGTGCAAA CCTATGATAA AAATGTAAAT TATGGTGATA TTGAAGTCGA ATTAATGACG TTTATTTGCC ACCATATTGC CGGCGTAATG GAAAGGCTTA AACATCAAGA ACAGTTAGAG CAAGCGATAC AACAGCGCAC CAAAGAACTT AGCCAAGCCT ACGATAAACT CAAGCAAGAA GTATATGAAA GGCGCAGAGC TGAACGTCTA CAAAAATCGT TGTTTGAAAT AGCAGAACTT GCCAGTTCTG GCACGGACAA CCCTGACTTT TACTCTCAAC TACATAATGT TATTCGCCAT TTAATACCCG CGAATAACTG CTATATTGCC TTACTCAATG AAGAAGAAAC CCATCTCACC TTCCCTTTTT ATGTATCACA ACTAGGTAAT AAGCATCCAG GAACTCGTCC ACTACAAGAT GGACTCACTG AATATGTGCT CAAACATAAA CGCCCACTAT TACTAGACCA AAATGATATT AATACCCTGA TCACCAGTGG CGAGATCTAT ACCAAAGCAC CCTCGTTAAA CCACACACAG ACGATGCATC AATGGATAGG TATTCCACTC TTTATCCATG ATCAAGTCCG TGGCGCGCTA ACCATTTATA GCTTTAGCAT GACGCAGAAT TATCAAATTA AGGATTTAGA GCTATTAACT TTCGTCTCAC AACATATTGG TGCGGCGATT GAGAAAAAGC TTTCAGCAGA ATCACTCCGT CGCAGTTATG AAGAACTTGA AGAAAAAGTC ATCGCCAGAA CAAAAGATTT AGCCGAGCTG AATAAAGACC TTGAGAAAGA GATCCTCCAA CGTCGTAGTA TGGAAGCAAA ATTAGTTCAC GATGCAAAGC ACGATGCGCT TACGGGCCTC CCTAATCGTG CCATGTTTAT GGAACGCTTA AATCAAGCAA TCAAGCATGT TAGGCGCCAC AGCCTCGAAC AGTTTGCCTT ATTGTTTATC GATCTCGACC GCTTTAAACA GATAAACGAC ACTCTTGGCC ATCTTGAAGG CGACCGATTC TTAATCGAAA CCGCAAGTCG CCTGAGATCC TGTATTCGCG ATAACGATAC CTTAGCCAGA CTCGGTGGTG ACGAGTTTGT TATTCTACTC GATAGCATTA ACAGTATTAA TGATGCCAAA GATATATCCG AACGAGTCAT CCAAACCATT TCTCAATCTT ACAAACTAGG CTCAGTAGAA TTTAACTCTG GTGCCAGTAT TGGCATAACT GTCAGTGGTA ATCATAAATT CGATACCAGT GAATCTATGT TGCGCAATGC AGATATGGCT ATGTATCAAG CAAAAGCAAA TGGCAAAGGT TGCTATGTTA TTTTTGACGA TAGTTCGTCA CAACAAGCTA TGCAAGATGC GGCATTTGAA AATGACTTTA GACGAGCATT GCAGCAATCT GAGCTACAAC TGAATTATCT CCCTATTGTG GACTTAAATA CTCAAGAAGT TTATGCATTA GAAAGCCGCC TATTTTGGGA ACATCCCCTA CGAGGTACGG TACAACAGGA GCAGCTTAAT GCCCTTGCTG AGCAAACGAA TCTTATTGTA GAGCTAGATA AATACACCTT AGCAGCCGTG AATCGAACCT ATCCACAATT ACTTAGAAGC TATGGAGATA AACTTAATCT GCATGTGATG CTATCTAGCC AACATATAAA GCATAAGCAT GTACTTCGTA GTCTAAAAAA TGTTCTCAAG CAAACTCAAC TTAATCTAAG TCGTTTATGG TTATTCTTTA GTGAAAAGGC ATTAGTTCAG GAAACTGAAA ACCATATTAA TGGTTTTGAA CTACTTGATA AACTTGGCGT TAATCTTGGA ATAAGCCACT ATGGCAGTGG TCATAGCGCA CTAAACAACC TGCTATTTTT ACCCATAAAA GGGTTAAAAC TCGATGCCAA TATCACCCAA CAGCTAGTGG ATGAACAACA CATTAAGTTG ATATCTGCCT ATCAAAAAGC GGCGTCAACA TTAGGATTAC AAACCTTTGT AGATGGGATT AAAAGCCAAG AACAAATCCG TATATTTAGC TCATTGGGTT ATCAGTTTGG CCAAGGAATA GCCTTAGCTG AAACCTTTTC GCTGGCGGAT AATCAGCAAC AAGATTGTGC TTAA
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Protein sequence | MFKDEDETTQ SSTLRVERLK KRIIRLKYLA HKYKRAEIIQ NALLELSNIA TQVSSLEEFY VGVHQHLKQL ISADNFFIAT LDVASGTIAV PFFADEKDAH PAQLYPEESL STLLQQGLTG YVFRTGRALL CDNDKVDELI AAGEIVNLGS PCHLWLGVPI KHDGIMTGVL VVQTYDKNVN YGDIEVELMT FICHHIAGVM ERLKHQEQLE QAIQQRTKEL SQAYDKLKQE VYERRRAERL QKSLFEIAEL ASSGTDNPDF YSQLHNVIRH LIPANNCYIA LLNEEETHLT FPFYVSQLGN KHPGTRPLQD GLTEYVLKHK RPLLLDQNDI NTLITSGEIY TKAPSLNHTQ TMHQWIGIPL FIHDQVRGAL TIYSFSMTQN YQIKDLELLT FVSQHIGAAI EKKLSAESLR RSYEELEEKV IARTKDLAEL NKDLEKEILQ RRSMEAKLVH DAKHDALTGL PNRAMFMERL NQAIKHVRRH SLEQFALLFI DLDRFKQIND TLGHLEGDRF LIETASRLRS CIRDNDTLAR LGGDEFVILL DSINSINDAK DISERVIQTI SQSYKLGSVE FNSGASIGIT VSGNHKFDTS ESMLRNADMA MYQAKANGKG CYVIFDDSSS QQAMQDAAFE NDFRRALQQS ELQLNYLPIV DLNTQEVYAL ESRLFWEHPL RGTVQQEQLN ALAEQTNLIV ELDKYTLAAV NRTYPQLLRS YGDKLNLHVM LSSQHIKHKH VLRSLKNVLK QTQLNLSRLW LFFSEKALVQ ETENHINGFE LLDKLGVNLG ISHYGSGHSA LNNLLFLPIK GLKLDANITQ QLVDEQHIKL ISAYQKAAST LGLQTFVDGI KSQEQIRIFS SLGYQFGQGI ALAETFSLAD NQQQDCA
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