Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_3582 |
Symbol | dapF |
ID | 5078818 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 4159715 |
End bp | 4160542 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640500784 |
Product | diaminopimelate epimerase |
Protein accession | YP_001185089 |
Protein GI | 146294665 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.653633 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGATCCAAT TCACTAAGAT GCACGGACTG GGCAACGATT TTATGGTGGT CGATGGTGTC ACGCAGAACG TGTTCTTTTC GCCTGAGCAG ATCCGCCGTT TAGCCGACCG TAACTTTGGT ATAGGTTTTG ACCAACTACT CTTGGTCGAG CCGCCCTATG ATCCGGATTT AGATTTTCAC TATCGCATCT TTAATGCCGA TGGCAGTGAA GTTGAGCAGT GTGGTAATGG TGCTCGCTGT TTTGCCCGTT TTGTGCGCAA TAAAGGACTA ACAAATAAGA ACAAAATTCG TGTTAGTACT TCATCTGGCA AAATGACATT GCGTTTGGAG CGCGATGGAA CTGTGACGGT GAATATGGGT GTTCCGATAC TTGAACCAAG CCTTATTCCC TTTAAAGCTA AAAAGCCTGA AAAAACATAT TTACTGCAAA CTGCGCAGCA AACTTTTTTA TGTGGCGCCG CTTCTATGGG CAATCCCCAT TGCGTGCTTG ATGTGGAAGA TGTGGCCAGT GCCGCCGTTG CCGAGATTGG TGCTTTGCTG ACAAAACATG AACGCTTTCC GCGTGGGGTG AATGTCGGAT TTATGCAGGT GATAAACTCT GGCCATATTA AACTGCGTGT TTATGAGCGC GGAGCTGCTG AAACCTTAGC TTGTGGCACA GGTGCCTGCG CTGCAGTGGT TGTGGGTCAA ATACAAGGTA AACTTGATCA GCAAGTCCGT GTGGATTTAC CGGGAGGCAC GTTAACCATC AACTGGGAAG GCGAGGGTAA ACCCCTGTGG ATGACGGGGC CAGCACAACA TGTTTATGAT GGACAAATTC AGCTATGA
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Protein sequence | MIQFTKMHGL GNDFMVVDGV TQNVFFSPEQ IRRLADRNFG IGFDQLLLVE PPYDPDLDFH YRIFNADGSE VEQCGNGARC FARFVRNKGL TNKNKIRVST SSGKMTLRLE RDGTVTVNMG VPILEPSLIP FKAKKPEKTY LLQTAQQTFL CGAASMGNPH CVLDVEDVAS AAVAEIGALL TKHERFPRGV NVGFMQVINS GHIKLRVYER GAAETLACGT GACAAVVVGQ IQGKLDQQVR VDLPGGTLTI NWEGEGKPLW MTGPAQHVYD GQIQL
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