Gene Sputcn32_3577 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_3577 
Symbol 
ID5078813 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand+ 
Start bp4156136 
End bp4156639 
Gene Length504 bp 
Protein Length167 aa 
Translation table11 
GC content46% 
IMG OID640500779 
Productputative transcriptional regulator 
Protein accessionYP_001185084 
Protein GI146294660 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.535476 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACATTTC AATCCTTTGC GCTCGACGAT ATTGCCAACT TACAAGAATC GGCTCAGGTG 
GAATTTAAAC TCGCGGGTGG CCGTGACGGC CAAGGCCAAC TGCCCGAGGA TATTTGGGCA 
ACTTATAGTT CTTTTGCCAA CACCTTAGGT GGTGAGATCA TCCTCGGCGT ACGAGAAGAA 
CGCGGTCAGT TCACTATTGA AGGTATTCCT AATCCTCTGC CAGTATTACA AGAGTTTTGG 
GAAATCCTCG ATGATCCACA GCGCACAAGC CACAATATTC TTGAGATTTC AGATGTTCAG 
CTCATTGAAA TTATGAATAA AAAACTTATC CGGATCCGAG TACCTCTCGC CTCTGAACAC 
TTAAAGCCCA TCTATATTGG CGGTAACGCT TACACAGGTA CGTATTTTCG AATAGGAGAT 
GCCGACATGC ACGCCAGCCG CCGGCAGGTA AACCAATTAT TAAGACGTGC CCATCTGTGC 
AATAAACAGA TCAAGGCACG TTAA
 
Protein sequence
MTFQSFALDD IANLQESAQV EFKLAGGRDG QGQLPEDIWA TYSSFANTLG GEIILGVREE 
RGQFTIEGIP NPLPVLQEFW EILDDPQRTS HNILEISDVQ LIEIMNKKLI RIRVPLASEH 
LKPIYIGGNA YTGTYFRIGD ADMHASRRQV NQLLRRAHLC NKQIKAR