| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3567 |
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| Symbol | |
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| ID | 5078803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 4145305 |
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| End bp | 4147416 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640500770 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001185075 |
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| Protein GI | 146294651 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000019891 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAATA AAAGGATTCG ACGCAAACTG ATTGCTGGAG TTGTGGCGGG CGCTGCCATG
TTTACCTCCC AATTTGTTTG GTCAGAACAG TATGCGGCCA ACTTCAAGGG CACTGATATT
CAAGAGTTTA TCAACATTGT TGGTAAAAAT TTGAATAAGA CCATCATTGT TGACCCAACG
ATCCGTGGCA AAATTAACGT ACGCAGTTAT GACCTGCTGA ATGACGAACA GTATTACCAG
TTCTTCCTTA ACGTGTTGCA AGTTTATGGT TATGCCATTG TCGAGATGGA AAATGGCGTG
ATTAAGGTTG TTAAAGACAA AAGCGCCCAG ACGGGGGCAA TCCGTGTCGC GAACGATAAT
GATCCCGGCA TTGGCGATGA AATGGTTACC CGTATTGTGG CCTTGTATAA CACTGAGGCT
AAGCAACTCG CTCCCCTGTT ACGCCAGCTA AATGATAACG CCGGTGGTGG CAACGTCGTC
AACTACGATC CTTCCAACGT ACTTATGCTG ACGGGCCGAG CCTCTGTGGT TAACAAGCTG
GTGGAAATTA TCCGCCGTGT TGATAAACAA GGGGATACAT CGGTACAAGT GGTGCCGCTA
GAGTACGCAT CAGCGGGTGA AATGGTGCGA ATTATCGATA CCCTTTACCG TGCAAGCGCA
AACCAAGCGC AGTTACCCGG TCAAGCACCC AAAGTGGTGG CCGATGAACG TATTAACGCT
GTCATCGTTA GTGGTGATGA AAAGAGCCGT CAGCGGGTGG TTGAGCTCAT TCATCGTCTC
GATGCGGAGC AAGCCAGCAC AGGAAACACT AAGGTACGTT ATTTACGCTA CGCCAAAGCG
GAAGATTTGG TTGAAGTGTT AACGGGTTTT GCCCAAAAAC TGGAAGGTGA AAAAGATCCA
AGTGCGCAGG CGGGTGCGAA ACGTCGTAAT GAAATCAACA TTATGGCTCA CACAGATACA
AACGCTTTAG TGATCAGCGC CGAGCCGGAT CAAATGCGTA CTATTGAGAG CGTGATTAAC
CAGCTCGATA TTCGCCGTGC TCAAGTATTG GTCGAAGCCA TTATCGTCGA AGTTGCTGAG
GGCGATAATG TCGGTTTTGG CGTGCAATGG GCTGCTAAAG CAGGTGGTGG TACTCAGTTT
AATAACTTAG GCCCAACCAT AGGTGAGATT GGCGCAGGGA TTTGGCAAGC ACAGGATAAA
GAAGGTACTT ATATTACGAA CCCCAGCACG GGTGAGGTTA TAGGTAAAAA CCCTGACACT
CAAGGTGATG TCACCTTACT TGCCCAAGCT TTAGGTAAGG TCAATGGTAT GGCTTGGGGT
GTGGCCATGG GGGACTTTGG TGCCTTAATT CAAGCCGTGT CGAGTGATAC TAACTCTAAC
GTATTGGCAA CACCTTCGAT TACCACCTTA GATAACCAAG AAGCCTCATT CATCGTGGGT
GATGAAGTGC CTATTTTGAC AGGGTCTACC GCCAGTTCAA ATAACAGCAA CCCATTCCAA
ACCGTTGAAC GTAAAGAGGT TGGGGTTAAG TTGAAAGTGG TGCCACAAAT CAACGAGGGC
AATGCGGTTA AGCTGGCGAT TGAACAAGAA GTGTCAGGCG TTAACGGTAA CACGGGTGTG
GATATTTCCT TTGCGACTCG CCGTCTAACC ACCACTGTTA TGGCTGACTC TGGGCAAATT
GTGGTACTCG GGGGTTTGAT TAACGAAGAA GTGCAGGAAA GTGTGCAAAA AGTACCTTTC
CTTGGTGATA TACCCGTGCT TGGGCATTTA TTCAAATCTT CCTCCAGTAA AAAGACGAAG
AAAAACCTGA TGATCTTTAT CAAGCCAACC ATTATTCGTG ATGGTATGAC AATGGAAGGG
ATTGCTGGGC GTAAATACAA CTATTTCAGA GCGTTACAAC TTGAGCAACA AAAGCGTGGT
GTTAACTTAA TGCCGGATAC TCAAGTCCCT GTATTGGATG AATGGAATCA ATCTGAGTAT
CTACCGCCGG AAGTGAACGA TATTTTAGAG CGTTACAAAG ATGGCAGAGG CCTAGACACC
CAGATGCGTA AAACGGATTC AACGCTCAAA ACGCTGGATG AAAACAAAAA TAAAGATAAA
ACCAATGAGT GA
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| Protein sequence | MNNKRIRRKL IAGVVAGAAM FTSQFVWSEQ YAANFKGTDI QEFINIVGKN LNKTIIVDPT
IRGKINVRSY DLLNDEQYYQ FFLNVLQVYG YAIVEMENGV IKVVKDKSAQ TGAIRVANDN
DPGIGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLML TGRASVVNKL
VEIIRRVDKQ GDTSVQVVPL EYASAGEMVR IIDTLYRASA NQAQLPGQAP KVVADERINA
VIVSGDEKSR QRVVELIHRL DAEQASTGNT KVRYLRYAKA EDLVEVLTGF AQKLEGEKDP
SAQAGAKRRN EINIMAHTDT NALVISAEPD QMRTIESVIN QLDIRRAQVL VEAIIVEVAE
GDNVGFGVQW AAKAGGGTQF NNLGPTIGEI GAGIWQAQDK EGTYITNPST GEVIGKNPDT
QGDVTLLAQA LGKVNGMAWG VAMGDFGALI QAVSSDTNSN VLATPSITTL DNQEASFIVG
DEVPILTGST ASSNNSNPFQ TVERKEVGVK LKVVPQINEG NAVKLAIEQE VSGVNGNTGV
DISFATRRLT TTVMADSGQI VVLGGLINEE VQESVQKVPF LGDIPVLGHL FKSSSSKKTK
KNLMIFIKPT IIRDGMTMEG IAGRKYNYFR ALQLEQQKRG VNLMPDTQVP VLDEWNQSEY
LPPEVNDILE RYKDGRGLDT QMRKTDSTLK TLDENKNKDK TNE
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