Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_3424 |
Symbol | |
ID | 5079815 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 3995142 |
End bp | 3996407 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640500623 |
Product | type II secretion system protein |
Protein accession | YP_001184933 |
Protein GI | 146294509 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.760778 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTACGG CAACGACAGT AAAAAAGCCT CGCCCAAAGA AGATTGAGCC CAAAAGCCAA CCAAAGATTT TTACCTTTGA ATGGAAAGGC ACTAACCGCG ATGGCAAAAA AACGGGTGGT GAGTTAAAGG GTGCAACAGT TGCAGAGGTA AAAAGCCAGC TCAAATCCCA AGGAGTAAAT CCTAAAGTCG TACGAAAAAA AGCATCTCCT TTCTTTGCCC GTAATCCTGA TATCAAGCCC ATGGATATCG CGATGGCAAC TCGCCAGATA GCGACTATGC TGGCCGCCGG CGTTCCGCTT GTGACCACAA TAGAAATATT GGGGCGTGGC CATGAAAAAC TCAAAATGCG CGATCTGTTA GGGACAATTC TGTCAGAGAT TCAATCGGGT ATTCCGCTAT CAGACGCCCT GCGCCCCCAT AGGCGTTATT TTGATGATCT CTATGTAGAC TTAGTGGCAG CAGGTGAACA CTCAGGTTCG CTCGATGCGG TATTTGATCG CATTGCAACC TACAGGGAAA AAGCGGAGCA GCTAAAATCT AAAATCAAAA AAGCCATGTT TTATCCCGCC GCCGTTGTGG TAGTCGCTAT TTTAGTGACC ACATTGTTAT TACTCTTTGT CGTACCTCAG TTCGAAGATA TTTTTAAAGG ATTTGGCGCA GAACTCCCCG CCTTTACACA GATGATCATT GGTATCTCGC GATGGTTGCA AAGCTCTTGG TATCTCTTTT TCATTGCGAT TACGGTGGGA ATTTGGTTAT TTGTCCGTGC CCATCGCAAT TCACAAATGG TTCGTGACCG TGTTGATGAG TTTGTACTTA AGATCCCTGT TATCGGCGAA ATTCTGCATA AGGCGGCCAT GGCGCGCTTT TCTCGTACCT TAGCCACCAC CTTTGCGGCA GGTGTGCCGT TGATTGATGG GATGGAATCC GCAGCGGGAG CATCAGGTAA TGCCGTATAT CGCAAAGCAC TGTTAAAAGT ACGCCAAGAG GTCATGGCTG GTATGCAAAT GAACGTCGCG ATGCGTACTA CGGGTTTGTT CCCCGATATG CTGATCCAAA TGGTGATGAT TGGTGAAGAG TCTGGATCGC TAGATAATAT GCTAAATAAG GTGGCTAATA TTTATGAAAT GCAAGTCGAT GACGCTGTGG ATGGTTTATC GAGTCTAATT GAACCCATTA TGATGGTGGT GATTGGCACC CTTGTGGGTG GTTTAATTGT GGGAATGTAT CTCCCTATCT TCCAAATGGG AAATGTCGTA GGCTAA
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Protein sequence | MATATTVKKP RPKKIEPKSQ PKIFTFEWKG TNRDGKKTGG ELKGATVAEV KSQLKSQGVN PKVVRKKASP FFARNPDIKP MDIAMATRQI ATMLAAGVPL VTTIEILGRG HEKLKMRDLL GTILSEIQSG IPLSDALRPH RRYFDDLYVD LVAAGEHSGS LDAVFDRIAT YREKAEQLKS KIKKAMFYPA AVVVVAILVT TLLLLFVVPQ FEDIFKGFGA ELPAFTQMII GISRWLQSSW YLFFIAITVG IWLFVRAHRN SQMVRDRVDE FVLKIPVIGE ILHKAAMARF SRTLATTFAA GVPLIDGMES AAGASGNAVY RKALLKVRQE VMAGMQMNVA MRTTGLFPDM LIQMVMIGEE SGSLDNMLNK VANIYEMQVD DAVDGLSSLI EPIMMVVIGT LVGGLIVGMY LPIFQMGNVV G
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