| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3390 |
|---|
| Symbol | |
|---|
| ID | 5078012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3947252 |
|---|
| End bp | 3948226 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640500590 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_001184900 |
|---|
| Protein GI | 146294476 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATTCGG ATACCACAGC GTTAATTCAG CAACTTCAAG CAGAAATTGC TCAGCTAAAA
AGCGAAAATG CCCATTTATC GGCATTGAAT TATCGTGCAG AAGAAAAGCT ATTTGCAGCG
CTTGATGGTA ATGGTTTGTG TCTCTGGGAG CAGCATATTC CAAGCGGAAA TTTAACTATA
TTCAATATGC GCTGGGGGGA AATGCTCGGG TTTAGTCCAG AAGAGTTGGC TGCCCATGTT
GATATCTGGA AAAGTAAATT ACACCCAGAA GATAAAGCGT GGGTTATACA AGTCTTCGAA
GATCACGTTA GCGGCAAGTC TGATTATTAT CAGGCAGTGT ACCGAATGTT GCATAAAGAT
GGCAGCGTCA CTTGGGTCTC TGATCGTGGT CGAATTGTTG AGCGCTTAGC CGATGGTACA
CCACTGCGAA TGATGGGCAG CCATATCGAT ATCACCCAAG AGAAACGCTA TGAAATGGGG
TTAGCGCAAC TGGCCCACAG TGATCCATTA ACCAATTTGT TGAATCGCCA AGCCATTACT
AAAGCCTTTG ATGAATTGTT ATTGTCTGAT GCTGGTGGAG CATTACTATT TATCGATCTT
GATGGATTTA AAGCATTAAA TGATCGCCAT GGACATAAGT TTGGCGATAG CTTACTGATA
CATGTAGCGA ATACCTTAGT GTTGCATGCT GGGGAGTATG CACAGATAGC AAGATTTGGT
GGTGATGAGT TTGTGATCTT GCATCCTTCA TCGGAGATTG CTTCTTTGAC TCAACTTGCC
CAATCATTGC TTGATGTTTA TCGACAGCGT TTTCTGTTAG ATGGGCTTGA AGTAGAGATC
GGTCTGAGTA TTGGTATCGA TATTTTTGGA GATGGCGACA GTTTTACTGA CAGTTGTGAG
CGTGCAGATA TGGCAATGTA TGATGTTAAA CGTCAAGGTA AGAATGGATA CTGTTTCTAT
AGGAAGATTA TTTAG
|
|---|
| Protein sequence | MDSDTTALIQ QLQAEIAQLK SENAHLSALN YRAEEKLFAA LDGNGLCLWE QHIPSGNLTI
FNMRWGEMLG FSPEELAAHV DIWKSKLHPE DKAWVIQVFE DHVSGKSDYY QAVYRMLHKD
GSVTWVSDRG RIVERLADGT PLRMMGSHID ITQEKRYEMG LAQLAHSDPL TNLLNRQAIT
KAFDELLLSD AGGALLFIDL DGFKALNDRH GHKFGDSLLI HVANTLVLHA GEYAQIARFG
GDEFVILHPS SEIASLTQLA QSLLDVYRQR FLLDGLEVEI GLSIGIDIFG DGDSFTDSCE
RADMAMYDVK RQGKNGYCFY RKII
|
|---|
| |