| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3244 |
|---|
| Symbol | |
|---|
| ID | 5080085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 3769859 |
|---|
| End bp | 3771223 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640500441 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001184755 |
|---|
| Protein GI | 146294331 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACTA TCGGCACCGA AAAATATACT GCTGAATGGC TTGCCCTAGT CAACAACCTC
TCCAGATCTG ATGCAGGGCA ACTAGAGCAC CTTATTCATC AAAATCAACA TGCCCTTAGC
GATACTTTTT ATCAAGCGAT GATGCAAGAC AGTTCAGCAT CTGAATTCTT GTCTAATGAT
TTAGTACAAA AACGCTTAAA AGCATCAATG CAACAATGGT TGACGGATAT GTTTCAAAGT
CAGACGACCG AGCATATTCA AGCACTCGTT GCACAACAGA TAAAAATTGG TGAAATTCAC
GCCCGAATTG GTGTACCAGT ACACTTAGTA CTCAATGGCG CTCGCTACCT AAAAACAAGA
ATCACCCAGT TAACCAGTCA CGCACTTGCA TCCCATGCAA GTATCTTGAT TGATTTGGCA
ATGGAGATAA TGAGCCAAGC GTATTCTAAC TCACATGAGC GAAATTCCCG CTCAGAGGAA
GCCTATCGCT TACATGCTAT TGCACAAAAC ATTGCCCATG AAAAAGATAA ACAACGTGCC
GCGTTCCTAG ATTGGGAAAA CAAAGTCATG TTTGATTGCG CAAGTGGTGT TGATGCAGCG
CTACTTCAGC CATTATATTC TTCTGAGTTT GGTTTATGGT TTCGCCATAA AGCAGAGCAC
GCTTTTGCGG GCGCGGAGGA GATAACACTG ATTAATGACG GTATTAACCA TATTGATAAT
GTGTTGCTAC CTCTTTTAGC ATTACCCTCC TTACAAGCCG ATACCAAAAA GCTCCAATGC
CTTCGTGAAT TGCGCGAGCA ATCTAAATCT ATCCGTTACT ATCTTGATCT TTTATTTGAG
CAAAATCGAG AGGTTGAATC TGGTCGTGAT GTTCTTACGC GGTTGTTAAA CAGAAAATTT
CTCCCCGCAG TGATGACGAA AGAAGTCAAC TATAGTCGGC GCAATAAAAG TCAATTTGCG
ATACTTGCTA TTGATATTGA CCATTTTAAA ACCGTAAATG ATTCCTATGG ACATGAAGGC
GGTGACCTTG TATTGCAACA TCTGGCGGCA TTACTGAGTA ATACAGGTCG AGGTGGAGAT
TATTTATTTC GCCTCGGTGG AGAGGAATTT CTAATGTTGT TAGTCGATAT AAACGCCAGA
GAAGCGGCTC TCTCGGCTGA AAATATCCGA CGCAAAGTTG AGCGTGAAAC CTTTTTACTG
CCACACAATC AACAACTACA AATTACAGTC AGTATTGGTT TAGCAATGTA TGATGGGCAT
CCAGACTATC AACGATGTTT ACGGGCTGCT GACGATGCGC TATTTGCCGC TAAGCGCGCT
GGCCGTAACT GTATTATCAC CGCGATAGAC AAAGCTGACA GCTAA
|
|---|
| Protein sequence | MPTIGTEKYT AEWLALVNNL SRSDAGQLEH LIHQNQHALS DTFYQAMMQD SSASEFLSND
LVQKRLKASM QQWLTDMFQS QTTEHIQALV AQQIKIGEIH ARIGVPVHLV LNGARYLKTR
ITQLTSHALA SHASILIDLA MEIMSQAYSN SHERNSRSEE AYRLHAIAQN IAHEKDKQRA
AFLDWENKVM FDCASGVDAA LLQPLYSSEF GLWFRHKAEH AFAGAEEITL INDGINHIDN
VLLPLLALPS LQADTKKLQC LRELREQSKS IRYYLDLLFE QNREVESGRD VLTRLLNRKF
LPAVMTKEVN YSRRNKSQFA ILAIDIDHFK TVNDSYGHEG GDLVLQHLAA LLSNTGRGGD
YLFRLGGEEF LMLLVDINAR EAALSAENIR RKVERETFLL PHNQQLQITV SIGLAMYDGH
PDYQRCLRAA DDALFAAKRA GRNCIITAID KADS
|
|---|
| |