| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3154 |
|---|
| Symbol | |
|---|
| ID | 5078498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3667622 |
|---|
| End bp | 3669715 |
|---|
| Gene Length | 2094 bp |
|---|
| Protein Length | 697 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640500351 |
|---|
| Product | elongation factor G |
|---|
| Protein accession | YP_001184665 |
|---|
| Protein GI | 146294241 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0480] Translation elongation factors (GTPases) |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00484] translation elongation factor EF-G |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000051485 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAT TATCCAAATA CAGAAACATT GGTATCTTCG CTCACGTTGA CGCGGGTAAA
ACCACGACCA CCGAGCGTAT TCTTAAGCTA ACTGGTAGAA TTCACAAAGC TGGTGAAACA
CACGATGGTG AATCTACAAC AGACTTCATG GTTCAGGAAG CTGAGCGCGG TATTACCATT
CAATCAGCAG CAGTAAGCTG TTTCTGGAAA GAACACCGTT TCAACGTTAT TGATACCCCA
GGGCACGTTG ACTTCACCGT TGAAGTTTAC CGTTCTCTGA AAGTACTCGA CGGCGGTATA
GGTGTATTCT GTGGTAGCGG CGGTGTTGAG CCTCAATCAG AAACTAACTG GCGCTATGCT
AACGAATCTG AAGTTGCTCG TATCATCTTC GTAAACAAGT TAGACCGTAT GGGTGCTGAC
TTCCTGCGTG TTGTTAAGCA GACTAGAGAT GTTTTAGCGG CTAACCCACT GGTTATGGTT
CTGCCTATCG GTATCGAAGA CGAGTTTAAA GGTGTTGTTG ACCTATTAAC CCGTAAAGCC
TACATATGGG ATGATTCAGG TTTACCAGAA AACTTCAGTG TGACAGACGT TCCAGCTGAC
ATGGTTGATC AAGTTGAAGA ATACCGTGAA ATGCTGATCG AATCTGCTGT TGAGCAAGAT
GACGATCTGA TGGAAGCCTA CATGGAAGGC GAAGAGCCAT CGATTGAAGA CCTGAAACGT
TGTATCCGTA AGGGTACTCG TACAATGGCT TTATTCCCAA CATACTGTGG TTCTGCGTTC
AAGAACAAGG GTATGCAACT GGTTCTAGAC GCTGTTGTTG ATTACTTACC AGCGCCAAAC
GAAGTTGATC CACAACCTTT AACAGACGAA GAAGGTAACG AAACTGGCGA ACACGCTATC
GTTTCTGCCG ATGAGCCATT GAAAGCGTTA GCGTTCAAAA TTATGGACGA CCGTTTCGGT
GCTCTGACCT TCGTACGTGT TTATTCTGGC CGTTTGAAGA AAGGCGATAC CATTCTTAAC
AGTGCGACTG GTAAGACTGA ACGTATCGGC CGTATGTGCG AAATGCACGC AAACGACCGT
ATCGAAATTG AATCGGCTGA AGCTGGTGAC ATTATCGCTA TCGTGGGCAT GAAGAACGTG
CAAACGGGTC ACACTCTGTG TGATGTTAAG CACCCATGTA CATTAGAAGC CATGGTGTTC
CCTGAGCCTG TAATCTCTAT CGCAGTAGCG CCAAAAGATA AAGGTGGTAG CGAGAAGATG
GCTATCGCTA TCGGTAAGAT GATCGCTGAA GATCCATCTT TCCGCGTAGA AACAGACGAA
GATTCAGGTG AAACCATCCT TAAAGGTATG GGTGAACTGC ACTTAGATAT CAAAGTTGAC
ATCTTGAAGC GTACTTACGG CGTTGAGTTG ATCGTAGGTG AGCCACAAGT GGCCTACCGC
GAAACCATTA CTCAAATGGT TGAAGACCAA TACACCCACA AGAAACAATC TGGTGGTTCT
GGTCAATTCG GTAAGATTGA ATACATCATC CGTCCTGGTG AGCCAAATTC TGGTTTCGTA
TTCAAATCTT CAGTTGTGGG TGGTAGTGTT CCTAAGGAAT TCTGGCCTGC AGTTGAGAAA
GGTTTTGCGA GCATGATGAA CACGGGTACT ATCGCTGGCT TCCCAGTGTT AGACGTAGAG
TTCGAATTAA CTGACGGTGC TTACCACGCA GTTGACTCAT CAGCTATCGC GTTCGAAATC
GCTGCTAAAG CGGCATTCCG TCAGTCTATC GCTAAAGCTA AGCCACAACT TCTTGAGCCA
ATCATGAAAG TTGACGTGTT CAGCCCAGAA GACAACGTGG GTGATGTGAT CGGTGACTTA
AACCGTCGTC GCGGTATGAT CAAAGACCAA ATCGCAGGTG TGACTGGTGT TCGTATTAAG
GCTGACGTAC CGTTATCAGA AATGTTCGGT TATATCGGTA CTCTACGTAC AATGACTTCT
GGTCGTGGTC AGTTCTCTAT GGAGTTCTCA CACTACACAC CATGTCCAAA CAGCGTAGCT
GAAAAAGTAG TTGAGCAAGT TAAAGAGCGT AAAGCTGCTG AAGCTAAGAA GTAA
|
|---|
| Protein sequence | MTELSKYRNI GIFAHVDAGK TTTTERILKL TGRIHKAGET HDGESTTDFM VQEAERGITI
QSAAVSCFWK EHRFNVIDTP GHVDFTVEVY RSLKVLDGGI GVFCGSGGVE PQSETNWRYA
NESEVARIIF VNKLDRMGAD FLRVVKQTRD VLAANPLVMV LPIGIEDEFK GVVDLLTRKA
YIWDDSGLPE NFSVTDVPAD MVDQVEEYRE MLIESAVEQD DDLMEAYMEG EEPSIEDLKR
CIRKGTRTMA LFPTYCGSAF KNKGMQLVLD AVVDYLPAPN EVDPQPLTDE EGNETGEHAI
VSADEPLKAL AFKIMDDRFG ALTFVRVYSG RLKKGDTILN SATGKTERIG RMCEMHANDR
IEIESAEAGD IIAIVGMKNV QTGHTLCDVK HPCTLEAMVF PEPVISIAVA PKDKGGSEKM
AIAIGKMIAE DPSFRVETDE DSGETILKGM GELHLDIKVD ILKRTYGVEL IVGEPQVAYR
ETITQMVEDQ YTHKKQSGGS GQFGKIEYII RPGEPNSGFV FKSSVVGGSV PKEFWPAVEK
GFASMMNTGT IAGFPVLDVE FELTDGAYHA VDSSAIAFEI AAKAAFRQSI AKAKPQLLEP
IMKVDVFSPE DNVGDVIGDL NRRRGMIKDQ IAGVTGVRIK ADVPLSEMFG YIGTLRTMTS
GRGQFSMEFS HYTPCPNSVA EKVVEQVKER KAAEAKK
|
|---|
| |