| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3148 |
|---|
| Symbol | |
|---|
| ID | 5078492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 3661511 |
|---|
| End bp | 3663991 |
|---|
| Gene Length | 2481 bp |
|---|
| Protein Length | 826 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640500345 |
|---|
| Product | nitrate reductase catalytic subunit |
|---|
| Protein accession | YP_001184659 |
|---|
| Protein GI | 146294235 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01706] periplasmic nitrate reductase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATAA GTCGCCGCGA GTTTCTCAAG GCCAACGCAG CCCTTGCCGC TGCGACGGCC
GTTGGCGTGA CGCTTCCCGT GAAAATGGTT GAAGCCGCCG AGTCAGATAA TATCAAATGG
GATAAAGCGC CCTGCCGTTT TTGCGGCGTA GGATGTAGCG TATTAGTCGG CACTAAAGCG
GGTAAAGTCG TTGCCACTAA GGGTGATCCA GAAAGCCCTG TTAACCGTGG CTTAAACTGC
ATTAAAGGTT ACTTCCTGTC GAAAATCATG TACGGCAAGG ACAGATTAAC CACGCCACTG
CTACGGATGA AAGACGGCAA ATACCATAAA GAAGGTGAGT TTACCCCTGT TAGCTGGGAT
GTCGCCCTTG ATACTATGGC CGCTAAGTGG AAACACAGCA TTGCCACTAA AGGCCCGACT
TCTGTCGGTA TGTTCGGTTC AGGCCAGTGG ACGATTTGGG AAGGTTACGC CGCTTCCAAA
CTGCATAAAG CGGGTTTTTT AACCAATAAT ATCGACCCTA ACGCGCGCCA CTGCATGGCC
TCGGCTGTGG TTGGCTTTAT GCGTACCTTT GGTATCGATG AACCTATGGG TTGCTATGAC
GATTTAGAAG CCGCTGACCA CTTTGTGCTT TGGGGCGCGA ATATGGCCGA GATGCACCCT
ATTTTATGGG CACGTTTATC TGATCGCCGT TTAAGCAGTC CGAGTTGCCG CGTACATGTA
CTCTCTACCT TTGAGAATCG CAGCTTCGAC TTAGCCGATA ACCCTATGGT TTTCCATCCG
CAATCAGATC TAGTGATCCT CAACTATATC GCCAACTACA TCATTCAAAA CAAAGCTGTA
AACACTGACT TTGTCACTAA ACATACTCAA TTTGCCTTAG GTGTTGATGA TATTGGCTAT
GGTCTGCGTC CAGATCATCC ATTAGAGAAG AAAGCCAAAA ACCCTGGCAA TGGTAAATCA
ACCCCAATTA GCTTTGACGA GTACGCTAAG TTCGTCAGCA CTTATACGCT GGAATACGCG
GCTAAGATGA GTGGTGTGGA GCCTGAAAAA CTCGAAACCT TAGCCAAAGC CTATGCCGAT
CCCAAGGTGA AGGTTATGAG TCTTTGGACC ATGGGGATTA ACCAACACGT ACGTGGCGTA
TGGGCAAACA ATATGCTCTA CAACCTCCAC TTACTGACGG GCAAAATCGC GACTCCCGGT
AACAGCCCAT TCTCATTAAC AGGTCAACCC TCTGCCTGTG GCACCGCCCG TGAAGTCGGC
ACCTTCGCCC ATCGTCTACC CGCTGACATG GTTGTGGATA ACGATAAGCA CCGTGCTATT
ACTGAAAAAA TGTGGCAAGT GCCAGAAGGC ACGATTCCAC CAAAACCGGG TTACCACGCG
GTACTTCAAA GCCGTATGCT CAAAGACGGT AAGCTCAATT GTTATTGGAC AATGTGTACC
AATAACATGC AAGCAGGCCC CAATATCAAT GAAGAAATGT ATCCAGGCTT CCGTAACCCT
GAAAACTTTA TCGTGGTATC CGATCCTTAT CCTACGGTAA CTGCCATGGC GGCGGATTTA
ATCCTGCCAA CGGCAATGTG GGTAGAGAAA GAAGGGGCCT ACGGTAATGC CGAGCGCCGC
ACCCATATGT GGCATCAACA AGTCAAAGCG CCAGAAGGGG CAAAATCCGA TCTGTGGCAA
TTAATGGAAT TTGCGAAACG CTTTAACGTG TCAGAGGTGT GGCCTGCAGA GCTTATCGCC
AAACAGCCAG AATACGCAGA TAAGACCCTG TTTGAAGTGC TATTTGCCAA CGGCGTGATC
AACAAGTTTC CAACAACCGA TTGCAAGGCT GAATTAAACG ATGAAAGTCA GCACTTTGGT
TTTTATGTAC AAAAAGGCAT TTTCGAAGAA TATGCCGCCT TTGGCCGTGG CCATGCCCAT
GATTTAGCCG ACTTTGACCG CTACCACGAA ACCCGCGGTC TGCGCTGGCC AGTGGTCAAT
GGTAAAGAAA CCCTGCGCCG TTTCGTTGAG GGTAGCGATC CTTACGTCAA AGCAGGTGAA
GGCTTTAAAT TCTATGGTAA ACCAGATGGT AAAGCAGTGA TTTTCGCCCT GCCCTATGAG
CCTGCAGCGG AAGAGCCGAA CTCAGAATAC GATCTGTGGA TGTCAACTGG CCGCGTGCTC
GAACACTGGC ATACAGGTTC AATGACAGCA CGGGTGCCTG AACTCTATCG CGCTTATCCC
GATGCACAAA TCTTTATGCA TCCAGAAGAC GCCAAGGCTC GTGGTCTACA ACGTGGTGAT
GAAGTAGTTG TCGCCTCTCC CCGTGGTGAG GTCAAAACCC GTGTTGAAAC CAAAGGCCGT
AACAAACCGC CACGCGGCGT AGTGTTTATG CCCTTCTTCG ATGCGCGTCA GTTAGTGAAC
AAGTTGATTC TGGATGCAAC CGATCCACTG TCAAAAGAAA CTGACTTTAA GAAGTGCCCA
GTCAAAGTGA TGAAGGCTTA A
|
|---|
| Protein sequence | MSISRREFLK ANAALAAATA VGVTLPVKMV EAAESDNIKW DKAPCRFCGV GCSVLVGTKA
GKVVATKGDP ESPVNRGLNC IKGYFLSKIM YGKDRLTTPL LRMKDGKYHK EGEFTPVSWD
VALDTMAAKW KHSIATKGPT SVGMFGSGQW TIWEGYAASK LHKAGFLTNN IDPNARHCMA
SAVVGFMRTF GIDEPMGCYD DLEAADHFVL WGANMAEMHP ILWARLSDRR LSSPSCRVHV
LSTFENRSFD LADNPMVFHP QSDLVILNYI ANYIIQNKAV NTDFVTKHTQ FALGVDDIGY
GLRPDHPLEK KAKNPGNGKS TPISFDEYAK FVSTYTLEYA AKMSGVEPEK LETLAKAYAD
PKVKVMSLWT MGINQHVRGV WANNMLYNLH LLTGKIATPG NSPFSLTGQP SACGTAREVG
TFAHRLPADM VVDNDKHRAI TEKMWQVPEG TIPPKPGYHA VLQSRMLKDG KLNCYWTMCT
NNMQAGPNIN EEMYPGFRNP ENFIVVSDPY PTVTAMAADL ILPTAMWVEK EGAYGNAERR
THMWHQQVKA PEGAKSDLWQ LMEFAKRFNV SEVWPAELIA KQPEYADKTL FEVLFANGVI
NKFPTTDCKA ELNDESQHFG FYVQKGIFEE YAAFGRGHAH DLADFDRYHE TRGLRWPVVN
GKETLRRFVE GSDPYVKAGE GFKFYGKPDG KAVIFALPYE PAAEEPNSEY DLWMSTGRVL
EHWHTGSMTA RVPELYRAYP DAQIFMHPED AKARGLQRGD EVVVASPRGE VKTRVETKGR
NKPPRGVVFM PFFDARQLVN KLILDATDPL SKETDFKKCP VKVMKA
|
|---|
| |