| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2965 |
|---|
| Symbol | metH |
|---|
| ID | 5079860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 3436965 |
|---|
| End bp | 3440699 |
|---|
| Gene Length | 3735 bp |
|---|
| Protein Length | 1244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640500165 |
|---|
| Product | B12-dependent methionine synthase |
|---|
| Protein accession | YP_001184479 |
|---|
| Protein GI | 146294055 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATAC CCTCAACCAA AGCCGGCCAG ATATTAGCAG ACATTCGCAA ACAGCTTGCA
GAGCGCATTC TGATCTTAGA CGGTGCCATG GGCACTATGA TCCAAGGCTA CAAGCTGGAG
GAAGAGGACT ATCGCGGCGA ACGCTTTAAA GATTGGCATA CCGATGTTAA GGGCAATAAC
GACCTGTTAG TGCTCACACA GCCTCACATT ATCAAACAAA TTCACACCGA CTACTTAAAC
GCCGGTGCAG ACATCATTGA GACCAACACC TTTAACGCCA CGACTATCGC CATGGCCGAC
TACGACATGC AGTCGCTGTC GGCCGAAATT AACCGCGAAG GCGCGCGCCT CGCCCGTGAA
GCCTGTGATG AAGCCTTTGC TGCCACAGGC ATTCCACGCT ACGTCGCCGG TGTGTTAGGC
CCCACTAACC GTACGTGTTC TATTAGCCCT GATGTGAACG ACCCAGGCTA TCGCAACGTC
AGCTTCGATG AGTTAGTGAC CGCTTACAAA GAGTCCACTA AGGCGCTGAT TGAGGGCGGC
GCGGATATCA TTATGGTCGA AACCATATTC GATACTTTAA ACGCCAAGGC CGCGCTGTTT
GCGATTGAAT CCGTATTCGA TGACTTATTT GGTCAGCATT CTAAAGACAG ACTGCCGATC
ATGATCTCGG GCACCATTAC CGATGCATCA GGCCGCACAC TGACAGGCCA AACGACCGAA
GCCTTTTATA ATTCCCTTCG CCATATCAAG CCCTTATCTA TCGGTCTTAA CTGCGCCCTT
GGGCCAAAAG AGCTGCGCCC CTATGTGGAA GAATTGTCAC GTATCAGCGA ATGCTATGTG
TCGGCGCACC CGAACGCGGG TCTACCGAAC GAGTTTGGCG GTTACGATGA AACCCCAGAA
GATATGGCGA ATGTGATCGA AGATTGGGCG CGCGAAGGCA TGCTCAATAT TATCGGCGGT
TGCTGTGGTA GTACGCCTGA ACATATTCGC GTTATTCGTC AAGCGGTTGA AAAATATGAC
CCTCGCGTCT TACCCGACAT TCCGGTTGCC TGCCGTCTTG CGGGTTTGGA ACCACTCACT
ATCGACGCCC AAACCCTGTT TGTGAACGTA GGCGAGCGCA CCAACGTCAC AGGTTCTGCC
AAGTTTTTAA AGCTGATTAA AGAAGGCAAG TTCGAGCAGG CGCTTGATGT CGCCCGTGAA
CAGGTTGAAA GCGGCGCGCA GATCATCGAT ATCAATATGG ATGAAGGCAT GCTCGATGGC
GTGGAGATCA TGCACAAGTT TTTAAACTTG ATTGCCTCTG AGCCGGACAT CAGCCGCGTG
CCGATTATGA TCGACTCCTC TAAGTGGGAG GTGATTGAAG CTGGCCTCAA ATGTATTCAA
GGCAAGGGGA TTGTTAACTC GATTTCCCTT AAGGAAGGCG AAGCCAAATT TATCGAGCAA
GCTACCTTAG TGAAACGCTA CGGCGCGGCG GCCATTATTA TGGCATTCGA TGAGCAAGGC
CAAGCCGATA CTAAGGCGCG CAAGATAGAG ATCTGTACCC GCGCCTACCG CGTGCTGGTC
GATAAGGTCG GCTTTCCGCC AGAAGACATT ATCTTTGACC CCAATATCTT TGCGATTGCC
ACGGGTATCG ATGAACACGA TAACTATGCC GTCGATTTTA TTGATGCCAT TAAAGCAATT
AAGGCCACCC TGCCCCATGC GATGATTTCG GGCGGCGTGT CGAACGTGTC GTTCTCCTTC
CGTGGTAACA ACCCAGTGCG CGAGGCGATC CACGCGGTAT TCCTGTACCA TGCGATTAAA
GTCGGCATGG ATATGGGGAT TGTGAACGCG GGTCAGTTAG CCATTTACGA TGATATCGAC
CCCGAGCTTA AAGTGCGGGT CGAAAACGTG GTGCTTAACT TGCCCTGCCC AGTTGAAGGC
TCGAGCAATA CAGAGCAGTT ACTTGAAATC GCAGAGAAAT TCCGCGGTGA TGGCGCGCAG
GTGGGTAAGA AAGAAGATTT AGAATGGCGC TCTTGGCCAG TTAATCAGCG TTTAGCCCAT
GCGCTCGTTA AAGGCATCAC CGAATTTATT GATGAAGATA CCGAAGCCGC TCGCCAAGTC
GCCTCCCGTC CACTCGATGT GATTGAAGGC CCGCTGATGG ACGGCATGAA TGTGGTCGGC
GACTTATTTG GCTCGGGCAA GATGTTCCTG CCACAAGTCG TTAAGTCTGC GCGGGTGATG
AAAAAGGCCG TGGCTTACCT CAATCCCTTT ATTGAAAAGG AAAAAGTCGC AGGTCAGTCT
AATGGCAAGA TATTGATGGT GACCGTAAAA GGTGACGTGC ACGATATCGG CAAGAATATC
GTCGGCGTGG TGCTCGCCTG TAACGGTTTT GAGGTATTCG ATTTAGGTGT GATGGTGTCG
GTGGAACGTA TTCTCGACGC CGTTAAAGAG CACAATATCG ACATTATCGG CATGTCGGGC
CTTATCACCC CAAGCCTTGA TGAGATGGTG CATAACGTGA AAACCTTCCA CCGCGAAGGC
TTAACTATTC CAGCAATTAT CGGCGGCGCG ACTTGCTCAA AAATCCATAC AGCGGTAAAA
ATCGCGCCCC ATTATCCCCA TGGCGCTATC TATATCGCCG ATGCGTCCCG CGCCGTGCCT
ATGGTCAGCA AACTAGTGAA TAACGAGACA CGCCAAGCCA CCATTGATGA AACCTACGCC
GAATACGACG ATATGCGCAC CAAGCGTTTA TCCCAAGCCA AGCGTAAAGA GATTGTTTCA
CTGGAGGCCG CCCGTGAAAA CCGCTGCCAA CACGATTGGG CCAGTTACAC CCCATTCAAA
CCCAATGTGC TCGGTCGCCA AGTGTTTGAT GATTATCCAT TAGAAGATTT AGTTGAGCGT
ATCGACTGGA CACCGTTTTT CCGCTCGTGG GAGCTGCACG GCCATTACCC TGAAATCCTC
AGCGATAAAG TCGTGGGCGT TGAAGCGCAA AAGCTGTTCG CCGATGGTCA GGCCATGCTT
AAAAAAATCA TCGAAGAAAA GTGGCTCACG GCGAAAGCGG TTATCGGCTT ATTCCCAGCC
AATACCGTGA ATTACGACGA TATTGAGCTG TATACCGATG AGTCGCGCAC CACAGTTGAA
ATGACCACCC ATCACCTGCG GATGCAACTT GAACGTGTCG GTAACGACAA CTTCTGCCTA
TCCGACTTTG TCGCGCCAAA AGACTCTGGC GTCGCCGACT ATATGGGTGG TTTTGCGGTC
ACTGCGGGCC ATGGGATTGA TGAACATGTG GCACGTTTCG AAGCCAACCA TGACGACTAC
AACGCCATTA TGCTCAAGTG TTTAGCCGAC CGTTTGGCCG AAGCCTTTGC CGAGCGGATG
CACGAACGGG TACGTAAAGA GTTTTGGGGT TATGCGGCCG ACGAGCAGTT AAGCAACGAA
GCCTTAATCC GCGAGAAATA CAAAGGTATA CGCCCCGCAC CGGGTTACCC AGCATGCCCA
GACCACACCG AAAAAGGCTT GTTATGGGAC TTGCTCAAGC CCGATGAAAC CATCGACTTG
AATATCACCG AAAGCTACGC CATGTTCCCT ACCGCTGCGG TATCGGGCTG GTATTTCGCC
CACCCGAAAT CCCGCTACTT TGGCGTGAGT AATATCGGCC GCGATCAAGT GGAAGATTAT
GCGAAGCGTA AAGGGATGAC TGTCGCAGAG ACTGAGAAGT GGCTGGCGCC AGTGTTGGAT
TATGATCCTG AATAA
|
|---|
| Protein sequence | MTIPSTKAGQ ILADIRKQLA ERILILDGAM GTMIQGYKLE EEDYRGERFK DWHTDVKGNN
DLLVLTQPHI IKQIHTDYLN AGADIIETNT FNATTIAMAD YDMQSLSAEI NREGARLARE
ACDEAFAATG IPRYVAGVLG PTNRTCSISP DVNDPGYRNV SFDELVTAYK ESTKALIEGG
ADIIMVETIF DTLNAKAALF AIESVFDDLF GQHSKDRLPI MISGTITDAS GRTLTGQTTE
AFYNSLRHIK PLSIGLNCAL GPKELRPYVE ELSRISECYV SAHPNAGLPN EFGGYDETPE
DMANVIEDWA REGMLNIIGG CCGSTPEHIR VIRQAVEKYD PRVLPDIPVA CRLAGLEPLT
IDAQTLFVNV GERTNVTGSA KFLKLIKEGK FEQALDVARE QVESGAQIID INMDEGMLDG
VEIMHKFLNL IASEPDISRV PIMIDSSKWE VIEAGLKCIQ GKGIVNSISL KEGEAKFIEQ
ATLVKRYGAA AIIMAFDEQG QADTKARKIE ICTRAYRVLV DKVGFPPEDI IFDPNIFAIA
TGIDEHDNYA VDFIDAIKAI KATLPHAMIS GGVSNVSFSF RGNNPVREAI HAVFLYHAIK
VGMDMGIVNA GQLAIYDDID PELKVRVENV VLNLPCPVEG SSNTEQLLEI AEKFRGDGAQ
VGKKEDLEWR SWPVNQRLAH ALVKGITEFI DEDTEAARQV ASRPLDVIEG PLMDGMNVVG
DLFGSGKMFL PQVVKSARVM KKAVAYLNPF IEKEKVAGQS NGKILMVTVK GDVHDIGKNI
VGVVLACNGF EVFDLGVMVS VERILDAVKE HNIDIIGMSG LITPSLDEMV HNVKTFHREG
LTIPAIIGGA TCSKIHTAVK IAPHYPHGAI YIADASRAVP MVSKLVNNET RQATIDETYA
EYDDMRTKRL SQAKRKEIVS LEAARENRCQ HDWASYTPFK PNVLGRQVFD DYPLEDLVER
IDWTPFFRSW ELHGHYPEIL SDKVVGVEAQ KLFADGQAML KKIIEEKWLT AKAVIGLFPA
NTVNYDDIEL YTDESRTTVE MTTHHLRMQL ERVGNDNFCL SDFVAPKDSG VADYMGGFAV
TAGHGIDEHV ARFEANHDDY NAIMLKCLAD RLAEAFAERM HERVRKEFWG YAADEQLSNE
ALIREKYKGI RPAPGYPACP DHTEKGLLWD LLKPDETIDL NITESYAMFP TAAVSGWYFA
HPKSRYFGVS NIGRDQVEDY AKRKGMTVAE TEKWLAPVLD YDPE
|
|---|
| |