| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2900 |
|---|
| Symbol | |
|---|
| ID | 5078647 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 3362021 |
|---|
| End bp | 3363319 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640500101 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001184416 |
|---|
| Protein GI | 146293992 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAGTC ACCATTTTGG ACTTAACTAC ATGAATGACA AGCAAATTAA ATCTTTTTTA
AAAAGCAAAG AGCTTGGACG TAAAGCTGTG GGGGACGGGC TTTATATCAG AGTCCAAACC
GAAGGCGTCG CATATTGGGA AGTCAGGTAC AGCGTTAACG GCAAACGTCG TTCAATGGTA
CCCAATGGTG GCGTTTACCC TGCAATGTCT TTAGTCGAAG CTAAAGCTGA AGCCGCAAAA
GTTAAACTGC TTGCCAAACA AGGGATAGAT CCTCTCGCCG AGCGGGAACG GCAACAAGAA
ATTACCATTA AGACCGTAAA TGATCTTTTT GACGATTGGT ATCAATGCAC CGCCCCACGT
TTAAAGCATC CAGAAATCCC GATGCGGATG TATACCAAAG ACATAAAACC CGCCATAGGC
CAATTAAAAG TAACCGACGT GAATGCCCGC GATATTAGGG CCATTCTTCA TAAGGTCGTT
AAAAGTAATC GCCCTACTGT TGCGAATAAA ACACTGTTGT TTTGTAAGCA GCTATTTAAC
CACGCTTGTA AGCTTGATGT CGCCTCAGGC AATCCTGCGG CCGCATTTAA CACTGCCGAT
GCTGGTGGAC TCGAAAAAAA TCGTACTAGG GTGTTATCCC TAAATGAAAT CGCCGCAGCA
TTTCCCGTAT TGAGAAATAG CAGACCCATT TTTAGTCATG AGAATTATCT TGCCGTCGCC
CTTTTGCTAT GCCTAGGAGT CAGGAAGGGT GAGCTAATCG CAGCCAAATG GAGTGAGTTT
GATTTCGACC AACAGGTTTG GCGTATGCCG AAAGAACGCA GCAAAACAGG CGTAGGAATA
ACGATTCCAT TGTCGGAATT TGTCATTGAA TGGCTAAAGG AATTAAAAAT CATCGCTTGT
GGCTCTGAGT ATGTATTCCC AGCACGTAAA GCCAGTAAGC GTCGTGAATA TATCGCAAAC
GATACTTTAA ACCATGCATT AGCCAAGCTG TTTGGTCAAA AACATGACAG CAATAAACAG
CCATTCGAAA ATTTACTCGG GAAGGCTGGT GTTGAGCATT TCACCGTTCA CGACCTACGC
CGTACCTGCC GCACTTTGCT CGCAAGCCTT AAGGTTCCCC CTCATATTGC CGAGCGGTGC
TTAAACCACA AGCTTAAGGG CATTGAAGGC ACTTATAACC ACCATGATTA TTTAGAAGAG
CGTCGAGAAG CGTTAGATAA GCTAGCGGCT TTGATCAGCC CAATTATAAA CAACCAAACG
AATGTCATCT CATTCATCAA ACCACAATCA GCGAAATAG
|
|---|
| Protein sequence | MFSHHFGLNY MNDKQIKSFL KSKELGRKAV GDGLYIRVQT EGVAYWEVRY SVNGKRRSMV
PNGGVYPAMS LVEAKAEAAK VKLLAKQGID PLAERERQQE ITIKTVNDLF DDWYQCTAPR
LKHPEIPMRM YTKDIKPAIG QLKVTDVNAR DIRAILHKVV KSNRPTVANK TLLFCKQLFN
HACKLDVASG NPAAAFNTAD AGGLEKNRTR VLSLNEIAAA FPVLRNSRPI FSHENYLAVA
LLLCLGVRKG ELIAAKWSEF DFDQQVWRMP KERSKTGVGI TIPLSEFVIE WLKELKIIAC
GSEYVFPARK ASKRREYIAN DTLNHALAKL FGQKHDSNKQ PFENLLGKAG VEHFTVHDLR
RTCRTLLASL KVPPHIAERC LNHKLKGIEG TYNHHDYLEE RREALDKLAA LISPIINNQT
NVISFIKPQS AK
|
|---|
| |