Gene Sputcn32_2845 details

Gene Information

• Locus tag: Sputcn32_2845
• Symbol: secD
• ID: 5078679
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella putrefaciens CN-32
• Kingdom: Bacteria
• Replicon accession: NC_009438
• Strand: -
• Start bp: 3305362
• End bp: 3307176
• Gene Length: 1815 bp
• Protein Length: 604 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640500041
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001184363
• Protein GI: 146293939
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.012953
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAAGAA AACCCAATCA ACGGCTGTTA AATCACTATT CAGCCTGGAA ATACGTAGTC 
TTGGTTGTTA CTCTCATTGT GATGTTATTC AGTGCCTTGC CAACATTTTA TGGTGAGGAT 
GCCGCAGTGC AAGTGGGCGC GAAGGCGGGG TTAACACTCG CGCCTGTTGC CCTTCGAGAT 
AAGCTGCAAG CTGAAGGCGT GACGGTAAAA CGTATCGACC AAAAGAATGG TGAAACCTTA 
ATTGTCCTCG ATGAGGATAG CCAACAAACC TTAGTCAAAA CTTTGGTTTC TTCTATGGTG 
ACAGAGCCAA AAGAGTTGAC TTTATCCCTT GCCAGTGCGG CGCCAAGTTG GTTACAAAAC 
TTAGGCTTTC AGCCGATTAA GCTGGGGCTC GATTTACGCG GTGGCGTACA GTTCTTACTC 
GATGTGGATG TTGAACCTGT GTATCAAACT CAGGCAGAAG CACTTGTCGA TTCACTACGC 
CAATTTATCC GTGAGCAGAA CATTCGTGGC GCTAGCGTGC ATTTGGATCA AAGCAGCCAG 
TTGAATGTAA CCTTGCCTGA TAATGATGCT CGCGCGGCCG TGCGTCAGAT GATGAAACAG 
TCCTATCCCA ATTGGCAGTC ATCTAATGCA GATGATGCTG GTTTACAGAT TAAGTTGAGC 
CAAGAAGAAC AAACGAAATT GCGTAATTTA ACCGTGCAGC AAAACCTGCA GGTTATGCGT 
AGTCGTATTG AAGAACTTGG CATCACTGAA GCCTTAGTGC AGCGCCAAGG CGAGCACCGA 
ATTCGGATTG AATTGCCTGG AGTACAAGAT CCTGCCGCCG CTAAAAACGT GATTGGTGCT 
ACAGCGAGCT TGGCTTTCTT CGAGGTGAAA GAGTCTGGCT CTGTGAATGC TATGGTACTT 
AAAGATAAGT CAGGTAATTC GGTTTATGTT GGTCGCACAC CAGTGCTGGG TGGCGATCAT 
ATTGTCGATG CGAGGGCAAG CATAGGCGAG ATGGGTATGG CCGAGGTGAA CATAAATCTT 
GACCGTGTCG GCGGGCAGAA AATGTCCGAG TTTTCCCGTA CCAATATTGG TAAGCCTATG 
GCGACGTCTT ACAGTGAATA CAGCCGTGAT GAGCAAGGTA AAGCCAAGCA AACTCAAGAA 
ATTATCAGCG TCGCGACCAT TCAATCTCAG CTTGGGGATC GTTTTCGCAT CACTGGTGCG 
GGCACCTACC AAGAAGCACA ACAATTAGCT CTGTTACTGC GAGCGGGTTC TATGACGGCG 
CCTGTGACTA TCGTTGAGGA GCGCACCATT GGTCCGACAT TAGGTGCTGA AAACATTGAA 
AACGGTTTTG CCGCGCTCGG TTTGGGTATG GGTATTACCT TGTTGTTTAT GGCGCTTTGG 
TATCGCCGTC TCGGTTGGGT GGCAAATATT GCACTGATTA GCAATATGGT GATCCTGTTT 
GGTTTACTGG CGCTTATCCC TGGCGCTGTA TTGACCTTAC CCGGTATTGC CGGCCTAGTG 
TTAACTGTGG GTATGGCGGT TGATACTAAC GTGCTGATTT TCGAGCGGAT AAAAGATAAG 
TTAAAAGAAG GTCGCAGTTT CGCGCTGGCG ATTGATACTG GGTTTGATAG CGCATTTTCT 
ACCATTTTCG ACGCTAACTT CACCACGATG ATCACCGCTG TTGTGCTTTA TTCCATTGGT 
AACGGTCCGA TCCAAGGTTT TGCCTTGACC TTAGGTCTAG GTCTATTGAC CAGCATGTTT 
ACCGGTATCT TTGCTTCAAG GGCCTTGATC AACTTAGTTT ATGGACGTGA TGCTAGCCGT 
CATGTGAGGG TATAA 

 

Protein sequence

MERKPNQRLL NHYSAWKYVV LVVTLIVMLF SALPTFYGED AAVQVGAKAG LTLAPVALRD 
KLQAEGVTVK RIDQKNGETL IVLDEDSQQT LVKTLVSSMV TEPKELTLSL ASAAPSWLQN 
LGFQPIKLGL DLRGGVQFLL DVDVEPVYQT QAEALVDSLR QFIREQNIRG ASVHLDQSSQ 
LNVTLPDNDA RAAVRQMMKQ SYPNWQSSNA DDAGLQIKLS QEEQTKLRNL TVQQNLQVMR 
SRIEELGITE ALVQRQGEHR IRIELPGVQD PAAAKNVIGA TASLAFFEVK ESGSVNAMVL 
KDKSGNSVYV GRTPVLGGDH IVDARASIGE MGMAEVNINL DRVGGQKMSE FSRTNIGKPM 
ATSYSEYSRD EQGKAKQTQE IISVATIQSQ LGDRFRITGA GTYQEAQQLA LLLRAGSMTA 
PVTIVEERTI GPTLGAENIE NGFAALGLGM GITLLFMALW YRRLGWVANI ALISNMVILF 
GLLALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK LKEGRSFALA IDTGFDSAFS 
TIFDANFTTM ITAVVLYSIG NGPIQGFALT LGLGLLTSMF TGIFASRALI NLVYGRDASR 
HVRV