Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2788 |
Symbol | |
ID | 5080761 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 3237389 |
End bp | 3238558 |
Gene Length | 1170 bp |
Protein Length | 389 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640499982 |
Product | Bcr/CflA subfamily drug resistance transporter |
Protein accession | YP_001184306 |
Protein GI | 146293882 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0332558 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATATAA AACCCCCTCT AGGGCTCGCT GTGCTGCTAA TGATATTTCC GCAAGCTATG GAAACCATCT ATAGCCCAGC ATTGCCGAAT ATTGCAGAAA ACTTTGCCGT GTCGGTTGGT GGCGCATCGC AAACCTTATC TGTGTACTTT ATTGCCTTTG CCATAGGCGT ATTTTGCTGG GGCCGCTTAG CCGACATTAT TGGTCGCCGC AAAGCTATGC TCGCGGGATT AGTGTGTTAT GCCATTGGCT CAGCATTAGC CTTGATGGTG AACGATTTTA GTCTGTTGTT GCTGGCCCGT GTATTGTCGG CCTTTGGTGC AGCAGTGGGT TCTGTGATTA CCCAAACTAT GATGCGTGAC AGTTATAGCG GAGAAGAATT AGCCAAAGTC TTTTCTGTGA TGGGAATGTC ACTTGGAATT AGCCCTGTTA TCGGATTGCT ACTGGGCAGC GTTCTCAGTG CGTATTGGGG ATATCAAGGT GTGTTTGTCG CACTTATGGT TTCTGCCATA GTGCTGTTGT TTTTGTCGAT AAAATCGTTA CCTGAAACCA AACCCGCACA TAGCCAGAAA ATAGCGATAG GTGAGTTAGC GATTAAGATG CTTACCGACA GCGGGATTAT TAAGAACACC TTCTTGGTGG CAGCGTTTAA TCTGATGTGG TTTAGCTACT TTTCACTGGC ACCATTTATG TTTGAGGCGC AAGGATTATC GACGCTTGCC TTCGGAACTA GTGGCTTACT ATTAGGCTTT GGCGCATTCC TTGGCAGTTA TTTTAATAGA ATATTGCTAG GTCGAGGCCA CACCAGCGTC TGGCTGATTC GCTTAGCCAG TGCAATCGCA CTTGTCGGTG GATTGGGTAT TTGGCTATTT CAATCGACTG TAATAGGACT GAATAGTGTT TACTTTTTAG CGCCTATGCT CTTGATTGTG ATTGCTTATG GGATCGCGAT TCCGAACATA CTCAGCTCGG CTCTGGCAAA CTACCGTGCT TATGCTGGCT CTGCTGGCGC ACTCTTTGGA CTGTTTTATT ATATTTTGCT CGGAGCGGCA TTGGGCTTTG TGGGCATGAT TAACCATCTC GGAGGCGTCA TTACGTTGGC GGCATTGCTC TGTACTGGGC TCTGTATTCG CGTCAGTACC GAGCAGGTTA TTAACTCATC TCAGGCATAA
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Protein sequence | MNIKPPLGLA VLLMIFPQAM ETIYSPALPN IAENFAVSVG GASQTLSVYF IAFAIGVFCW GRLADIIGRR KAMLAGLVCY AIGSALALMV NDFSLLLLAR VLSAFGAAVG SVITQTMMRD SYSGEELAKV FSVMGMSLGI SPVIGLLLGS VLSAYWGYQG VFVALMVSAI VLLFLSIKSL PETKPAHSQK IAIGELAIKM LTDSGIIKNT FLVAAFNLMW FSYFSLAPFM FEAQGLSTLA FGTSGLLLGF GAFLGSYFNR ILLGRGHTSV WLIRLASAIA LVGGLGIWLF QSTVIGLNSV YFLAPMLLIV IAYGIAIPNI LSSALANYRA YAGSAGALFG LFYYILLGAA LGFVGMINHL GGVITLAALL CTGLCIRVST EQVINSSQA
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