| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2771 |
|---|
| Symbol | |
|---|
| ID | 5080838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 3217879 |
|---|
| End bp | 3219537 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640499965 |
|---|
| Product | recombination and repair protein |
|---|
| Protein accession | YP_001184289 |
|---|
| Protein GI | 146293865 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0497] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.170925 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTGCC AACTCAGCAT TAATAACTTC GCTATCGTCC GTTTTTTAGA ACTGGATTTT
CGCCCAGGAA TGACCAGCAT CACTGGTGAA ACCGGTGCAG GTAAATCGAT CGCCATCGAT
GCGCTAGGTC TATGCCTAGG CAATCGCGCC GATGCCAGTT GTGTTCGCCC TGGTGCCAGT
AAAACTGAGG TCAGCGCCCG CTTTTCCTTA GATGATATTC CGCTAGCAAA GCGTTGGTTA
GAAGATAACG ATCTTGAACT CGATGATGAG TGTATTTTAC GCCGAACCAT TAGTAGCGAT
GGCCGCTCGC GCGCCTACAT CAATGGTAAT CCAGTACCGC TGACGCAACT CAAATTACTC
GGTCAGTTGC TTATAGGTAT TCACGGCCAA CATGCCCACC ATGCAATGTT AAAGAGTGAA
CATCAGCTCA CCCTGCTCGA CAGTTATGCC AACCACAGAT TACTTATCGA CACAGTTGCC
GCTAGCTTTC AACGCTGCAA GCAAATTGAG GCCGACCTAA AACAACTCGA AGCCTCCCAG
CATGAACGTA TTGCTCGTAA GCAATTAGTC CAATATCAAG TGGAAGAACT CGATGAGTTT
GATCTTAAAG TCGACGAGTT CGATGAAATT GAACAAGAAC ACAAACGTTT AGCCAATGGC
ACTGAGTTAA TTGCCACCTG TCAGGCGAGT CTTGATCTAC TGACAGATGG CGAAGAAAAT
AATATTGAGT CACTGCTCAA TCGCGTCGTT TCCCTCGCCG AAGATCTGCA AAGCTACGAT
CCCGCATTAA GCAATGTCAG CACTATGTTG AACGATGCCT TAATCCAAGT GCAAGAAAGT
GCAGGCGAAT TACAGCACTA TTTGAGTAAG CTCGAACTCG ATCCGACCCA TTTCGCCTAT
TTAGAAGAAC GGCTATCAAA AGCCATGCAA CTGGCGCGCA AACACCATGT CAGCCCGAAT
AAGCTGGCAG AACATCATCT AGCATTAAAG GCAGAGCTCA GCAGCTTAGA CAGTGATGAA
AGCAAGCTCG AAGAAGTTCA GCAACAAGTC GAGGCGAGCA GAGCAGCTTA CCTTAGCAAT
GCCCAAAAGC TCAGCCAAAG CCGTGCTCGT TACGCCAAGG AACTCGACAA ACTGGTGACG
CAGTCAATCC ATGAACTGAA TATGCCTAAG GGTAAATTTA CGATCGAAGT CAATTTCCAT
CCAGAGCAAA TGTCAGCCAA CGGCAGTGAC AACATCGAAT TTATGGTAAC AACAAACCCT
GGCCAACCCT TACAACCGAT TTCGAAAGTC GCGTCTGGCG GTGAGCTTTC ACGCATAGGA
TTAGGGATAC AAGTGATTAC CGCGAAGAAA GTTGCCACAC CGACATTAAT TTTCGATGAG
GTAGATGTCG GGATTTCCGG CCCCACCGCC GCAGTGGTGG GCCGCATGTT GCGCAGCTTA
GGGGAATCGA CCCAAGTCCT GTGTGTGACT CACTTGCCAC AAGTCGCGGG CAATGGTCAT
CAACACATGT TTGTCGATAA ATTTAATAAG GCAGGCAGTA CTGAGACCAC AATGAAATCG
CTCGATCGTG AGCAACGCAT TCAAGAATTG GCAAGACTGT TAGGCGGCGA TACTATCACC
AGCAATACCC TAGCAAACGC AAGGGAACTG CTGCAATAG
|
|---|
| Protein sequence | MLCQLSINNF AIVRFLELDF RPGMTSITGE TGAGKSIAID ALGLCLGNRA DASCVRPGAS
KTEVSARFSL DDIPLAKRWL EDNDLELDDE CILRRTISSD GRSRAYINGN PVPLTQLKLL
GQLLIGIHGQ HAHHAMLKSE HQLTLLDSYA NHRLLIDTVA ASFQRCKQIE ADLKQLEASQ
HERIARKQLV QYQVEELDEF DLKVDEFDEI EQEHKRLANG TELIATCQAS LDLLTDGEEN
NIESLLNRVV SLAEDLQSYD PALSNVSTML NDALIQVQES AGELQHYLSK LELDPTHFAY
LEERLSKAMQ LARKHHVSPN KLAEHHLALK AELSSLDSDE SKLEEVQQQV EASRAAYLSN
AQKLSQSRAR YAKELDKLVT QSIHELNMPK GKFTIEVNFH PEQMSANGSD NIEFMVTTNP
GQPLQPISKV ASGGELSRIG LGIQVITAKK VATPTLIFDE VDVGISGPTA AVVGRMLRSL
GESTQVLCVT HLPQVAGNGH QHMFVDKFNK AGSTETTMKS LDREQRIQEL ARLLGGDTIT
SNTLANAREL LQ
|
|---|
| |