Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2675 |
Symbol | |
ID | 5079986 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 3105676 |
End bp | 3106503 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 640499857 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_001184193 |
Protein GI | 146293769 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00133263 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAATC TAGAGGGTTT ATTAAATCAA GCACCAGAAT TATTGATGGC CTATGGTCTA AAAACTCTGT TCGCTATTAT TATCTTTTTT GTCGGTAAAT ATTTTTCAGG CGTAGCGCAA AAGGTTATAC GTAAATTACT AAACAGCCGT AAAGTTGATC CAACTGTTGT ATCTTTTGTT GCAAACTTAA CCTGGGCGAT TGTGTTTGTC TTTACTATTA TTGCAACATT AGGGCAAATT GGCGTACAAA CAGCATCACT TGTTGCCGTT ATCGGTGCAG CAGGTCTAGC TGTAGGTTTA GCGCTACAAG GTTCATTATC TAATTTTGCA TCTGGCGTCT TAATGGTATT ATTCCGTCCA TGCCGTGTAG GTGATTATAT TGAAGCCGCT GGTATTGCTG GTACTGTGGA TGAAATCACT ATTTTTTCAA CAAAACTACG CACTCCTGAT AATAAAGTTA TTGTGGCACC AAACTCCTCA ATTATGAATG GCACTATCAC GAACTACTCA GCCTTAGAAA ATCGCCGTAT CGATCTTGTT ATCGGTGTAT CTTATAAAGC AGATATTGCA TTAACTAAAA AAGTATTAAC AGATATCTTA GATAACAACC AATATGTACT AAAGGATCCG TCCTATACCG TTGGATTATC TGAACTGGGA AATTCCTCTA TTAATTTTGT AGTTCGTCCT TGGGTTAAAA CGCCTAATTT TTGGGCTGCA CGTTTTGAGA TCCTTGAGCA AATAAAAAAT GCTCTGGATG CCGCTAATAT TGAAATTCCA TTTCCGCAAA TGGATATTTA TGTAAAGCAA TTACCTGAAA ATAAATAA
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Protein sequence | MENLEGLLNQ APELLMAYGL KTLFAIIIFF VGKYFSGVAQ KVIRKLLNSR KVDPTVVSFV ANLTWAIVFV FTIIATLGQI GVQTASLVAV IGAAGLAVGL ALQGSLSNFA SGVLMVLFRP CRVGDYIEAA GIAGTVDEIT IFSTKLRTPD NKVIVAPNSS IMNGTITNYS ALENRRIDLV IGVSYKADIA LTKKVLTDIL DNNQYVLKDP SYTVGLSELG NSSINFVVRP WVKTPNFWAA RFEILEQIKN ALDAANIEIP FPQMDIYVKQ LPENK
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