| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2470 |
|---|
| Symbol | |
|---|
| ID | 5078604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 2867080 |
|---|
| End bp | 2868417 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640499638 |
|---|
| Product | aromatic hydrocarbon degradation membrane protein |
|---|
| Protein accession | YP_001183990 |
|---|
| Protein GI | 146293566 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2067] Long-chain fatty acid transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000167182 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAA TTGAGAGAAT AATAATGAAA ACATTCAACA AGACACTCAT TGCCGTTTCG
GTCGCATTAG CAAGCACGCA GACCTTGGCA GCGGGTTTCC AGCTCAATAG CCAATCCGCA
ACCGGCATTG GACGGGCATT TTCTGGTGAT GCTGTGATTG CCGATAACGC TTCTGTTCTG
TCACGCAACC CTGCTGCTAT GGCATTATTT GATAAAGATG CACTCTCTGT TGGTTTAACC
TATGTTGATA TTACCGTTGA TGTAAAAGAT GTTAACTTTG CGGGCGGTGC AATCGATCTT
GGCAGCATCG ATGATGCGGG CAGCACAAAA CTTATCCCTA ACCTTTTCTA TATCCACCCT
ATTAACGATA AATTCGCAGT AGGTTTTGCC GTATTCTCCA ATTTCGGTAC AGGCACTGAT
GCCAGTTCTC TGTCTAAAAA TGAGCCTTTA GCGCCCTTTG ACCTTTTAGG TAAAACAGAA
GTCACCACAG TTAACTTTAA TACCAGTGTT TCATACCGCA TAAACGATAT GTTCAGTATC
GGTGCAGGTC TTGATGGTGT TTATGGTGAA GGTCGCCTCA CTCGCGATGC CGGAACCACG
CCTATCGTTG ACGTCGATGC CGATGGCTGG GCATTAGGTG GGATTGTAGG GGCAACCATT
GAGCTTAATA AAGAAAACCG TTTTGGTTTA AGTTACCGCT TTAGCCCAAC GGTCAATGTT
AAAGGTGATG TTAATACCAT TTCTACTAAG GATTTATCCG CACTAGGACT TGGGGCACAA
ACCAAACTTG CCACCAGCTT TGATAGCCTT GATGTGCCAT TAGCGGATAT CTTCCAATTT
GCAGGTTTCC ATCAACTAAC ACCTAAATTT GCGTTGCACT ACACAGCCCA ATTCACTAAA
TGGGGTGACT TTCACCAAAT TACAGCGAAA GATGGTGTAG CGACCATTCT CCCTGGTCAA
GCCGGTGCGG GTATGTCAAT CAATGCTGGT GATATCGCTC TCAAAGAGTA TCAATGGAAG
GACTCATGGT TAATGAGTCT GGGTGGTACA TACACTATCA ATGACCAATT TACAGTTCGC
GCGGGTTACA TGCACGATCA AGGCGTAGTG GATGAAATTA GCTCTATCTC TATTCCAGAC
TCAGATCGCA ACTGGTTTAC TGCAGGTATG AGCTACCATG TAAACTCGCA AAATACGGTT
GATTTTGGTA TCGCCTATGT TAAAGGTGAA GAAGTTCACT TAATTGAAAA TAGCGCTATT
ACAGGCATAG GTCCCGTCAA TGCAATTACG GAATCAAGCG GTATGTACTA CTCAGTACAG
TACAGTTATC AGTTCTAA
|
|---|
| Protein sequence | MIKIERIIMK TFNKTLIAVS VALASTQTLA AGFQLNSQSA TGIGRAFSGD AVIADNASVL
SRNPAAMALF DKDALSVGLT YVDITVDVKD VNFAGGAIDL GSIDDAGSTK LIPNLFYIHP
INDKFAVGFA VFSNFGTGTD ASSLSKNEPL APFDLLGKTE VTTVNFNTSV SYRINDMFSI
GAGLDGVYGE GRLTRDAGTT PIVDVDADGW ALGGIVGATI ELNKENRFGL SYRFSPTVNV
KGDVNTISTK DLSALGLGAQ TKLATSFDSL DVPLADIFQF AGFHQLTPKF ALHYTAQFTK
WGDFHQITAK DGVATILPGQ AGAGMSINAG DIALKEYQWK DSWLMSLGGT YTINDQFTVR
AGYMHDQGVV DEISSISIPD SDRNWFTAGM SYHVNSQNTV DFGIAYVKGE EVHLIENSAI
TGIGPVNAIT ESSGMYYSVQ YSYQF
|
|---|
| |