Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2398 |
Symbol | |
ID | 5080476 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 2779224 |
End bp | 2780099 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640499566 |
Product | pseudouridine synthase |
Protein accession | YP_001183918 |
Protein GI | 146293494 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0731299 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGAAA AATTGCAGAA AGTCTTGGCC CGTGCAGGCC ATGGCTCCCG TCGTGAGATG GAGGCATGGA TTGCTGCAGG CCGAGTTAGT ATTGATGGTG AAATTGCTAG CCTTGGGGAT CGTATTGAAG CTGATGCTAA AGTGCGTATC GATGGCAGAG CCATTTCATT AAAGTCTGCC GAAGACGTGA TTTGCCGTGT GCTGGCATAT CATAAACCCG AAGGCGAAAT TTGTAGTCGT AAAGATCCTG AAGGCCGTCC AACGGTATTC GATCGCTTAC CTAAAGTGCG TGATTCTCGC TGGGTAGCGG TAGGTCGTTT AGACATTAAC ACCTCAGGTT TATTGTTGTT TACCTCAGAT GGTGAGTTAG CAAACCGTTT AATGCACCCA TCGAACGAAG TGGACCGTGA ATACGCGGTG CGTACCTTTG GTGAAATTCC AGAGGCGACA GTGCAACGTT TGCGTACAGG TGTGATGTTA GAAGACGGCC CAGCGCAGTT TGATAGCATC AAGCCAGCGG GCGGCGAAGG CATGAACCAG TGGTGGCATG TGTGTTTACG CGAAGGTCGT AACCGTGAAG TACGCCGTTT GTGGGAATCC CAAGAAGTGC AGGTGAGCCG TTTGATCCGT ATCCGTTATG GTATGGTCGA ATTGCCAAAA TCACTGCCCC GCGGTGGTTG GGTTGAATTG CCCGTTGAAC AAGTTAATTA TTTGCGTCAA TTAGCGGGTC TTGAGCCTGA AACGCGCACT ATGCTTGCTG CTGATAAACA CAGTGTGGCC CGTGCTCAGG TTAAAAGTGC CAAAATTCGC CGCGCGGTGC GTAAGCATAA AGTCACCGGG GCTGGAAAAG CTAAACCAAC GCGCCAGCGC AGTTAA
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Protein sequence | MSEKLQKVLA RAGHGSRREM EAWIAAGRVS IDGEIASLGD RIEADAKVRI DGRAISLKSA EDVICRVLAY HKPEGEICSR KDPEGRPTVF DRLPKVRDSR WVAVGRLDIN TSGLLLFTSD GELANRLMHP SNEVDREYAV RTFGEIPEAT VQRLRTGVML EDGPAQFDSI KPAGGEGMNQ WWHVCLREGR NREVRRLWES QEVQVSRLIR IRYGMVELPK SLPRGGWVEL PVEQVNYLRQ LAGLEPETRT MLAADKHSVA RAQVKSAKIR RAVRKHKVTG AGKAKPTRQR S
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