| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2357 |
|---|
| Symbol | |
|---|
| ID | 5080385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 2721102 |
|---|
| End bp | 2722949 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 615 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640499525 |
|---|
| Product | cyclic nucleotide-binding protein |
|---|
| Protein accession | YP_001183877 |
|---|
| Protein GI | 146293453 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCGA GTGAATTACA ACCCGTAGTG CAATTTCTCA AGGGGTTAGT TCCCTTTGAT
ACCTTACCTG ATGAGGTGGT TTTACGTTGT GCTAAGGCAA TCACCATAGG TTATTACAGT
AAGGCTTCGG GCTATGTAAG CTTCGATACC AATGCACCGA AACTATATAT AGTACGCAGT
GGTGCTTTTG AGGTGAGAGA TCCTGAAGGC GTGTTAGTTG ATAGAGTGGG TGAAGGTGAA
TTTTTTGGTT TTTCTACACT GCTATCGGGG GAGAAGGTTG TTAACAAAGT GGCAATACTG
GAGGATGGTC TGGTTTATCA TCTACCGCAA CCTTTGTTTG ATCAATTAAG GAGTGAGAGC
CGACATTTCG ATAAGTTTTT CACCCGAGCT TTTGCAAAGC GTCTTCGGCA TGAGGCGCGT
TTTAAAGCAA AAGATCTCAC GACAACAAGT CGTATCAGTA CGTTAATGTC TTCCGATCCT
ATTATGATTG ATGCCCATGC CAGTGTTACC CAAGCTGCAC TCCTGATGCG AAATGCGCGC
GTATCTTCTT TGTTGGTGAC GGATAATCAT AAATTAGTGG GTATTTTAAC GGATAAGGAT
TTACGTAATC GAGTATTGGC AGTAGGCCTC GATGGTCGCC TAGCTGTACA TCAAGCAATG
ACGGTTTCAC CGATTTCTAT TTCGTCGAAT GCATTAATTT TTGAAGCTAT GCTATTGATG
AGTGAGCATA ATATTCATCA TTTACCTATT ATTGATGAAG GTAAGGCTAT TGGCATGGTA
ACCAGTACCG ATATCTTGCG TGGACAAGGT TCTCAGCCGC TGTTGCTTAT TGGGGAAATT
GAGCGTCAGC AGGATCTGGC GAGCTTAATC TCTGTCAGTA AGCAAATTCC ACTATTGCTG
CAGAATTTAA TCAGTGCCGA TGCTAGGGCT GAAGAAATTG GACGTGTATT GACTTCGGTT
ACCGATGCAC TGACGCGGCG GTTAATCGTG CTTAATCAGC AGCTTCTTGG TGATCCACCG
ATGGCTTTTT GTTGGTTAGC GTTCGGCTCT CAAGGTCGAC AGGATCAAGC TGCATGTTCG
GATCAAGATA ATGGTCTACT GGTTGCAGAA GAAATGGATG ACTATGCGAA GGGATATTTT
GATGCGCTTA CCCATGCGGT ATGTTCTGGG TTAGATCAGT GTGGCTATGT TTTTTGTCCA
GGTAATATCA TGGCACAAAA TCCACAATGG CGAATGTCAC TAAAACAATG GCAACACCTA
TTTGAAAAGT GGGTGATAAC CCCAGAACCT AAAGCGTTAA TGCATGCCAG TATTTTTTTT
GATATGCGCT CGGTTTATGG GCCACAGACC TTATTTGATG CATTGCAGGA TAAAGTATTA
GCGCAAACCC GTGATAACGA TATCTTTCTT GCGGGAATGA CGGGGAATTC GTTGATTGAA
TCTCCCCCCT TAGGTTTTTT CCGCACATTT GTGCTCGAGC GTGATGGTAG TGAAGTAAAA
GGTATTGATT TAAAACATAA AGGTAATGCA TTAATTAATG ATATCGCCCG TGTCTATGCG
CTGTCAGCAG GCATAAAAGA AGTCAATACA GCCAAACGTA TTCGCGCTTT GATGGATGCC
AATATCCTCA ATCGTAAGGA TGCACTCAAT TTGGCCGATG CCCACGAGTT TATCGCCCAT
ATGCGCTTAG CTAATCAAGG TTACCAATAT ACTCAGGGGC AAAAAGTGAG TAACTACTTG
TTACCTGGTC ATTTATCATC ATTAGTTCGC CACCAATTAC GGGACGCCTT TAAGGTGGTA
CATGATGCTC AATCTGGCAT GAAAATGAAA TTTATGCGGA GCTTTTAG
|
|---|
| Protein sequence | MNASELQPVV QFLKGLVPFD TLPDEVVLRC AKAITIGYYS KASGYVSFDT NAPKLYIVRS
GAFEVRDPEG VLVDRVGEGE FFGFSTLLSG EKVVNKVAIL EDGLVYHLPQ PLFDQLRSES
RHFDKFFTRA FAKRLRHEAR FKAKDLTTTS RISTLMSSDP IMIDAHASVT QAALLMRNAR
VSSLLVTDNH KLVGILTDKD LRNRVLAVGL DGRLAVHQAM TVSPISISSN ALIFEAMLLM
SEHNIHHLPI IDEGKAIGMV TSTDILRGQG SQPLLLIGEI ERQQDLASLI SVSKQIPLLL
QNLISADARA EEIGRVLTSV TDALTRRLIV LNQQLLGDPP MAFCWLAFGS QGRQDQAACS
DQDNGLLVAE EMDDYAKGYF DALTHAVCSG LDQCGYVFCP GNIMAQNPQW RMSLKQWQHL
FEKWVITPEP KALMHASIFF DMRSVYGPQT LFDALQDKVL AQTRDNDIFL AGMTGNSLIE
SPPLGFFRTF VLERDGSEVK GIDLKHKGNA LINDIARVYA LSAGIKEVNT AKRIRALMDA
NILNRKDALN LADAHEFIAH MRLANQGYQY TQGQKVSNYL LPGHLSSLVR HQLRDAFKVV
HDAQSGMKMK FMRSF
|
|---|
| |