Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2354 |
Symbol | |
ID | 5080382 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 2718359 |
End bp | 2719060 |
Gene Length | 702 bp |
Protein Length | 233 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640499522 |
Product | GntR family transcriptional regulator |
Protein accession | YP_001183874 |
Protein GI | 146293450 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.000394326 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGAAC AGCCGAAAAT AGACGGAAAA ATGAGTCGAA CTACGCCTAT AGTCCACAAA ACCCGCACTC AGTTAGTTGT AGAAGCGCTC AGAGAGAAAA TTCTTTCAGG GGACATAGCC GCAGGAGAAC CGCTCAGACA AAGTGCTTTA GCTGAAGCCT TGCATGTGAG TAGGATCCCA GTAAGAGAAG CATTAGTGCA ACTCGAAGCG GAAGGGTTAG TCAAATTCGA ACCGCATAAG GGTGCAACTG CAACCGTATT ATCCGTCGAA CAAGTTACTG AACTATTTGA ATTACGAGCA ATGATTGAAA CGGATCTGCT TGCAAAGGCA ATTCCGCAAC TCCAAGAACA AGATTTAATT AAAGCAGAAC AGGTACTTGA GCAATTGGAA TCGGCCTTTA AACATGAAGA TGCCGTCGCC AGTTGGAGCG AGCTAAATAC ACAATTTCAC ACTTGTTTAT ATCAAGCCGC TAATCGCCCA CATACCCTTG AGGTCGTCCA CGGCCTTAAT ACAAACTGCG ATAGATATAT TCGTTTGCAA TTGTTGTTAG CAGGGGGAAT TCCTGCTGCA GAGCATGAGC ACCGTGCCTT GCTCAACCAT TGCAAATTAA GAGAAACAGA GAAAGCAACG GCGTTACTGC GACATCATAT TTTGCATGCC GCGATGACTA TCCGCGAGCT TGTCGCCAAA CAGGTGGACT AG
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Protein sequence | MKEQPKIDGK MSRTTPIVHK TRTQLVVEAL REKILSGDIA AGEPLRQSAL AEALHVSRIP VREALVQLEA EGLVKFEPHK GATATVLSVE QVTELFELRA MIETDLLAKA IPQLQEQDLI KAEQVLEQLE SAFKHEDAVA SWSELNTQFH TCLYQAANRP HTLEVVHGLN TNCDRYIRLQ LLLAGGIPAA EHEHRALLNH CKLRETEKAT ALLRHHILHA AMTIRELVAK QVD
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