| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2292 |
|---|
| Symbol | |
|---|
| ID | 5080264 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 2641136 |
|---|
| End bp | 2642002 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640499454 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001183812 |
|---|
| Protein GI | 146293388 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000000123532 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAATC CACAATGGTT ACACACATTT GCCGTTTTAG TCGAAAAAGG TAATTTTACC
CGCACGGCAG AAGCCATTGG TATAACCCAA GCGGCAGTCA GCCAGCATAT CAGTCGCTTA
GAAGAAGAAT ATGGCACCTT ATTTTTACGA CGAACGCGCC AGCTTGAAAT AACGCCAATA
GGCGAAAATT TACTCACCTA TGTAAAAGAA GTAGAATGCG CGGAAAAACG ATTACGACAA
AAACTGATCA AAGATGACAC CGACGTCGGT GATATCAGTC TTATCACACC AGGAAGCATA
GGCTTAACAC TTTTCCCATT GTTATTGGAG TTACAAACTG CTTTTCCCGC CTTAAATATA
CGACACCGCT TTGCACCAGA TAACGAAATC CTAACATCCG TTCTAGCCAA TCAGCATGAA
ATTGGTATGG TGACGTTAAA GCCCTCTGAT CCTCGGATTT TCAGTACTTA CTTTACCGAA
GAACCTTTAG AGTTAGTCGT ACCTGCCGGC CATAAAATTA ACACATGGCA GGACTTACAA
CGGTTAGGCT TTATCTCTCA TCCTGACGGT GAAGCCATGG CCATGAGGTT ACTGACCCGA
AAGTATCCTG GTTGTCCCAA TATTCAAGAG CTCCCCTGCA AAGGGTTTAC CAATCAAATT
AGCCTTATTC TTGAACCTGT TGCTAGAGGC TTAGGCTTTA CCGTTATACC AAGATATGCA
CGTAAAGCTT TTGAGCGGCA AGAAGATATT TATGTAGTGG AATGTGGCAT CCAAGTGGTT
GATACCATTT GGCTTATTCA CCGCGCAGAA TGGCCCTTGT CGCGCCGAGC CCAAAAAGCA
GTCGAGTTCC TTAAAAGCAG AATATAA
|
|---|
| Protein sequence | MINPQWLHTF AVLVEKGNFT RTAEAIGITQ AAVSQHISRL EEEYGTLFLR RTRQLEITPI
GENLLTYVKE VECAEKRLRQ KLIKDDTDVG DISLITPGSI GLTLFPLLLE LQTAFPALNI
RHRFAPDNEI LTSVLANQHE IGMVTLKPSD PRIFSTYFTE EPLELVVPAG HKINTWQDLQ
RLGFISHPDG EAMAMRLLTR KYPGCPNIQE LPCKGFTNQI SLILEPVARG LGFTVIPRYA
RKAFERQEDI YVVECGIQVV DTIWLIHRAE WPLSRRAQKA VEFLKSRI
|
|---|
| |