| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2275 |
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| Symbol | |
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| ID | 5080247 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 2620337 |
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| End bp | 2621401 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640499437 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001183795 |
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| Protein GI | 146293371 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0060878 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAAGT CTAAAATAAC CACCTTCGCT TTGCCTTTAT TAATGATGTC TATGTTGGCG
GCCTGTGGTG AAGAACAAGT CACAAAAAAA GAAGATAAAT ATGCCATTCC GGTCGAAACT
ACCACTGTGA TGCAAGGAGA TGTTTCTTCT TTTTACAGTA CAACAGCGAC CTTAGAAGCC
CCACAGGAAG CCAATGTCGT CAGTCGTATC TCTGGACTCA TTGAATCCAT CACTGTAGAA
GAAGGCGACC GCGTACGAAA AGGTCAAGTG CTGGCGGTTA TCGATGCTAA AAGACAACAA
TATGATTTAG ACCGCTCGGA AGCCGAAGTA AAAATCATTG AACAAGAACT TAACCGTTTA
AATAAAATGA GCAATAAGGA ATTTATTAGC GCCGATTCTT TGGCAAAACT TGAATACAAT
CTGCAAGCCG CTATCGCGAA AAAAGACCTT GCCGAGCTAC AAGTGAAGGA AAGCCGAGTT
ATCTCTCCTA TTGATGGCGT TATCGCCAAA CGCTACGTGA AAGCGGGTAA TATGGCCAAA
GAATTTGGCG ATCTGTTCTA TATCGTCAAT CAAGATGAAC TTCACGGCAT AGTCCATTTG
CCAGAACAAC AACTCACTAG CCTTAAACTT GGCCAAGAAG CACAAATTTT TAGCAACCAA
CAAAGCAATC AGACTATCGA TGCTAAAGTA CTGCGTATTA GTCCAATCGT CGATCCCCAA
AGTGGTACTT TTAAGGTGAC GCTCGCCGTT CCTAATGAAA ATGCCCGCCT CAAAGCAGGC
ATGTTTACCC GGGTTGAACT TAAATACGAT ACCCATGAAA ATGTGATTAC CGTTCCCTAC
AGTGCCTTGA TTAACCAAGA TAATAAACAA GCACTGTATG TTATTGAGGG AACAAATGCT
AATCGTCGCG AAGTCACAAT TGGCTATCGT GAAGGGGATG CGGTTGAAAT TGTTTCAGGT
ATCAAACCTG GTGAGCAAGT CGTTACCCGT GGGCACCAAA ACTTGAAAGA CCAATCCTTA
GTCGAAGTGA TCACACCACT CGATCTCGCA TCTGCTAAGA ACTAA
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| Protein sequence | MEKSKITTFA LPLLMMSMLA ACGEEQVTKK EDKYAIPVET TTVMQGDVSS FYSTTATLEA
PQEANVVSRI SGLIESITVE EGDRVRKGQV LAVIDAKRQQ YDLDRSEAEV KIIEQELNRL
NKMSNKEFIS ADSLAKLEYN LQAAIAKKDL AELQVKESRV ISPIDGVIAK RYVKAGNMAK
EFGDLFYIVN QDELHGIVHL PEQQLTSLKL GQEAQIFSNQ QSNQTIDAKV LRISPIVDPQ
SGTFKVTLAV PNENARLKAG MFTRVELKYD THENVITVPY SALINQDNKQ ALYVIEGTNA
NRREVTIGYR EGDAVEIVSG IKPGEQVVTR GHQNLKDQSL VEVITPLDLA SAKN
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