| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2271 |
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| Symbol | sdhA |
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| ID | 5080243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 2615807 |
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| End bp | 2617573 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640499433 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001183791 |
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| Protein GI | 146293367 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0457279 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGTATTC CAGTACGCGA ATTTGATGCA GTAGTGATAG GAGCGGGCGG TGCGGGTATG
CGCGCAGCTC TGCAGATTTC TAAAGAAGGT AAAAGCTGTG CGCTTTTATC AAAAGTTTTC
CCAACACGTT CTCATACTGT GTCTGCACAG GGAGGTATTA CCGTTGCGTT AGGTAATGCC
CATGAAGATC ACTGGGAACA ACATATGTAC GATACCGTTA AAGGTTCCGA TTTTATCGGC
GACCAAGATG CTATCGAATT TATGTGTCAA ACTGGTCCAG AAGCCATTAT TGAACTTGAG
CATATGGGGT TGCCTTTCTC TCGTTTTGAA AATGGTAAGA TTTATCAACG TCCTTTCGGC
GGTCAATCTA AGAACTTTGG TGGTGAGCAG GCGGCGCGTA CGGCGGCAGC TGCCGACCGT
ACAGGTCATG CTTTACTGCA TTGTTTGTAT CAGCAAAACG TTAAACACAA AACGCAAGTC
TTCTCTGAGT GGTATGCCTT AGATTTAGTG AAGAACGCTG ATGGTGCTAT CGTAGGCTGT
ACCGCGATTG AAATCGAAAC GGGCGATATC GTTTACTTCA AAGCCAAAGC CACCGTTTTA
GCAACGGGTG GTGCAGGTCG TATTTATGCG TCTACAACAA ACGCACATAT TAACACCGGT
GACGGTGTCG GTATGGCAAT GCGTGCTGGC GTACAAATGC AAGATATGGA AATGTGGCAA
TTCCACCCAA CGGGCATCGC CGGCGCGGGT GTACTTGTGA CTGAAGGTTG TCGTGGAGAA
GGTGGATATC TTCTAAATAA AGACGGCGAG CGTTTTATGG AGCGTTATGC GCCCAACGCG
AAGGATTTAG CATCACGCGA CGTAGTAGCA CGTTCTATGA TGACTGAAAT CCGTGAAGGC
CGTGGTTTAG ATGGTCCATT AGGTCCACAC TGTTTACTGA AGCTTGATCA CTTAGGTAAA
GAAACATTAG AAGCACGTTT ACCAGGCGTG TGTGAATTGT CTCGTACCTT TGCCCATATC
GATCCGGCCG ATGGCCCAAT CCCAGTATTA CCAACGTGTC ACTATATGAT GGGCGGTCTG
CCAACTAAGG TTAGCGGTCA AGTGATTCGT AAGCATGAAG ACGGCACTGA ACAGGATGTT
ATCGGTTTAT TCGCGGTAGG TGAGATTGCC TGTGTATCTG TACACGGCGC TAACCGTCTT
GGCGGTAACT CATTACTCGA TTTAGTCGTC TTTGGTCGTG CAGCGGGACA ACATTTAGGT
AAGGCGCTCG ATGAGACAGC CGATCCTAAA GATGCGACCG ATGCGGATAT TCAAGCGTCA
CTTGCACGTC TGAACCGTTG GGAAAACAAC AAAGATGGTG AAGATCCAGC GCAAATCCGT
AAGGATTTAC AACTTTGCAT GCAATTAAAC TTCTCTGTAT TCCGCCGTGG TGATGCTATG
GCTGAAGGCT TAGAGCAGTT AAAAGCGATT CGTAAGCGTT TAGAAAATGC TAAGTTGTCA
GATAACTCCC GTGAATTCAA CACGCAACGT ATTGAATGTT TAGAGTTAGA TAACTTAATG
GCGACGGCGA TTGCGACTGC TTACGCTGCC AACTTCCGTA CTGAGAGCCG CGGCGCTCAT
TCGCGTGAAG ATTATTTAGA GCGTGACGAT GAAAATTGGT TATGCCACAG CTTGTTTGAC
CCTGTGACAG AGACCATGGA CCGTCGTGCT GTGAATATGG CACCTAAGTT ACGTGAAGCA
TTCCCACCGA AGAAGCGTAC CTACTAG
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| Protein sequence | MSIPVREFDA VVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA
HEDHWEQHMY DTVKGSDFIG DQDAIEFMCQ TGPEAIIELE HMGLPFSRFE NGKIYQRPFG
GQSKNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTQV FSEWYALDLV KNADGAIVGC
TAIEIETGDI VYFKAKATVL ATGGAGRIYA STTNAHINTG DGVGMAMRAG VQMQDMEMWQ
FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG
RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL
PTKVSGQVIR KHEDGTEQDV IGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG
KALDETADPK DATDADIQAS LARLNRWENN KDGEDPAQIR KDLQLCMQLN FSVFRRGDAM
AEGLEQLKAI RKRLENAKLS DNSREFNTQR IECLELDNLM ATAIATAYAA NFRTESRGAH
SREDYLERDD ENWLCHSLFD PVTETMDRRA VNMAPKLREA FPPKKRTY
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