Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2158 |
Symbol | |
ID | 5080034 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 2473522 |
End bp | 2477010 |
Gene Length | 3489 bp |
Protein Length | 1162 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640499320 |
Product | transcription-repair coupling factor |
Protein accession | YP_001183678 |
Protein GI | 146293254 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0247263 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTCACT TTTCAGCCCT AACGCCACCA GTCGTCAAAA ATGGTACTCA AATGCAAACC CTATCCGCAC TCGGTGGTGT TTGCCAAGCG GTCACACTCG CCAGCTTAGT GCGCCAACAT CCAGGGACAA CACTGCTTGT CACCAGCGAC ACGCCTAGCG CCTTAAGCTT AGAGTTAGAG CTCACCTATT TACTCGGTAA ATGTGATATC AAGGTTCGGC TATTCCCAGA TCGTGAAACC TTGCCCTATG ACAGTTTCTC GCCCCATCAG GATCTGATCT CTCAACGCCT AGAAACGCTG TCACAAATAT CCCAAACCGA ACACAGTGTG GTTATCGTCC CCGTCACCAC TTTGATGATG CGCCTGCCAC CTAAAGCCTA TTTGAGCGCC AACGTCTTTG TGCTTAAAAA GGGCGATAGA TATCAATTAC ACAATGTACG CCAACATTTA ACTGATACAG GTTACCACTT GGTGGAGCAA GTGTATGAAC ATGGCGAGTT TGCCATTCGT GGTTCGATTT TGGATATTTT CCCGACGGGC GTTAATATGC CGCTGCGCAT CGAGCTATTC GATGATGAAG TTGAGACCAT TCGCCATTTC GACCCTGAAA CCCAGCGTTC GTTACATCCT GTTGAGTCCA TTCGCCTATT ACCGGCAAAG GAGTTTCCGA CTGACAGTGC CGCCATTGAA GGATTTAGGC AACGATACCG CCGCCGTTTT GAAGTGATAG TCAAAGAGCC TGAATCGGTT TACCAATTGG TAAGTCGTAA TCTCATGCCC GCAGGGATTG AAAATTACCT GCCACTGTTT TTTGATGAAG TCGCAACCCT ATTTGATTAC TTACCCAAGG AGACTCAACT TGTCACCCTT GGGGATATTG AAAAATCCGC CCGAGCCCAT TTGCAGGAAG TCGAAACCCG CTACCAAGAC AGACGTGTCG ATCCACTGCG GCCACTGCTC GCGCCTAAAG AACTGTATTT ACTGATTGAA GAGCTATTTG CAGCATTTAA ACCACTGCCG CGCTATCAGT TTATTTCGCC CACTACCGAG TCGGTAGAGA CAGGTAAAAC CACAGTTATC GATGCTAATC AACTTCCCGA TATCAGTGCG AATCACAAAT TAAAGCAGCC ATTACTCGCA TTACAAGATT ACGCCCAAAA TGCACCGCGG ATGCTATTTA GCGCCGAGTC TGAAGGACGG CGCGAAGCCC TGCTTGAACT CTTAAGTAAA ATCCAACTTA AACCCGCATT ATTCAGCCAT TTTGATGAAT TTATTCAAAG TGATGCCAAA CTGGGGCTTA TCGTTTCACC ACTATCACGC GGCTGTTTAC TTAAGCTCAG TCCAAAAGAT GCCGTGAGCA TTATTTGTGA GACAGAACTT TTTGGTCACC GTATCTCCCA GCAGCGGCGC CGGGAAAAAC AGCGCCAGAT CAGCAATGAT GCCCTGATTA AAAACTTAGC CGAACTGAAA GTCGGCCAAC CCATAGTGCA CCTCGAACAC GGTGTAGCGC TATACCAAGG CTTAGTGACC CTAGACACGG GCGGTTTAGT TGCCGAATAC CTGCAATTAG AATACGCAGG TGGCGATAAA CTCTATGTAC CCGTATCGAA CTTACACCTG ATCAGCCGTT ACAGTGTTGG TGCAGATGAA GACGCCCATC TCAATAAACT TGGCAACGAG ACGTGGGCCA AAGCCAAGAA CAAAGCCATA GAGAAAATCC GCGATGTGGC AGCAGAACTG CTTGATGTTT ACGCCCGTCG CCAAGCGCGT CCCGGCGAAA GTTGCGAGAT TGACGAAGAG GAATATGCCC AATTTGCCCA AGGGTTCCCC TTTGAAGAAA CCGTCGATCA AGAAAGTGCT ATTCATGCCG TATTAGCAGA CATGCGTTCC CCAATTGCCA TGGACAGACT TGTATGTGGT GACGTGGGCT TTGGTAAAAC GGAAGTCGCA ATGCGCGCGG CCTTTGTGGC CGTCAACGCA GGTAAGCAAG TCGTAGTGCT AGTTCCTACC ACCTTGCTTG CCCAGCAGCA TTATGAAAAC TTTAAGGATA GATTCGCCGA TTGGCCCGTT GTCACAGAGG TGATGTCGCG ATTTAGAACG GCAAAAGAAC AAACCCAAGT GCTCAAGCAG CTGGAAGAAG GTAAAGTCGA TATCGTTATC GGCACCCATA AGTTACTGCA ATCTGAAGCT AAATTTGAAA ATCTCGGCTT ACTGATCATT GATGAAGAAC ACAGATTCGG TGTACGCCAA AAAGAAAAAA TTAAGGCGCT GCGGGCCAAT GTGGATATTT TAACCCTCAC AGCAACCCCC ATTCCGCGAA CCTTAAATAT GGCCATGTCG GGCATGCGTG ATTTATCCAT TATCGCCACC CCACCCGCCA AACGCTTAGC CGTAAAAACC TTTGTTCGCG AATCCGATCC CGCAACCGTG CGCGAAGCCA TTCTGCGGGA AATTCTGCGT GGTGGCCAAG TCTATTATCT GCACAATAAT GTCGAAAGCA TTGAAAAGTG TGCCCAAGGG ATTATCGACT TAGTGCCTGA AGCTCGCGTT GTCGTCGCCC ATGGTCAAAT GCGTGAACGG GATCTTGAGC GAGTCATGTC AGACTTTTAT CATCAAAGAT TCAACGTGTT AGTCTGTACT ACTATTATCG AAACTGGGAT TGACGTCCCC AGCGCAAACA CCATTATTAT TGAGCGCGCC GATACCTTTG GTCTGGCACA ATTACACCAA CTGCGTGGTC GTGTAGGCCG CTCACATCAT CAAGCCTATG CTTATTTGAT GACACCACAC CCCAAACGCA TGACAAGTGA TGCCCGTAAA CGCCTTGAAG CCATTGATGC ACTAGAAGAT CTTGGTGCTG GATTTATGCT CGCAACCCAA GATTTAGAGA TCCGCGGTGC GGGAGAACTC CTTGGGGACG AGCAAAGCGG CCATATTTCC AAAATAGGTT TTAGCTTGTA CATGGAAATG CTTGAAGCGG CAGTCAAAGC CTTAAAACAA GGCAAAGAGC CATCGCTTGC GCAAATGCTC AACCAGCAAT GTGAAATCGA ACTAAGGATC CCAGCGCTAT TGCCTGAGGC CTATGTGAGC GATGTAAATA TTCGCCTATC CTTATATAAA CGCATTGCAG GCTGCGAAAC CCAAGAGGCA CTCGATGAAT TAAAAGTCGA ATTAATTGAT CGCTTTGGCT TACTGCCAGA GGCGACTAAA AACCTCATGG AAATGACGCT CTATAAACAT CAAGCAACTC GCCTAGGGGC GACTAAAATT GAAGTACACG CCAAAGGCGG CAGTATCGAA TTTAGCCATG ATCATGTGAT AGATCCGGGT TTTATTATTG GATTACTCCA AAGCCAGCCA CAAATCTATC GAATGGAAGG GCCGAATAAG TTAAAGTTCA GTCTTACTGC TGAAACAGCC AAAGATAGAC TCGATGTAGT CAAACTCTTG CTTGAACAAT TATCGCAACA TCGTCTTGGA GATAAATAG
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Protein sequence | MTHFSALTPP VVKNGTQMQT LSALGGVCQA VTLASLVRQH PGTTLLVTSD TPSALSLELE LTYLLGKCDI KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQISQTEHSV VIVPVTTLMM RLPPKAYLSA NVFVLKKGDR YQLHNVRQHL TDTGYHLVEQ VYEHGEFAIR GSILDIFPTG VNMPLRIELF DDEVETIRHF DPETQRSLHP VESIRLLPAK EFPTDSAAIE GFRQRYRRRF EVIVKEPESV YQLVSRNLMP AGIENYLPLF FDEVATLFDY LPKETQLVTL GDIEKSARAH LQEVETRYQD RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQFISPTTE SVETGKTTVI DANQLPDISA NHKLKQPLLA LQDYAQNAPR MLFSAESEGR REALLELLSK IQLKPALFSH FDEFIQSDAK LGLIVSPLSR GCLLKLSPKD AVSIICETEL FGHRISQQRR REKQRQISND ALIKNLAELK VGQPIVHLEH GVALYQGLVT LDTGGLVAEY LQLEYAGGDK LYVPVSNLHL ISRYSVGADE DAHLNKLGNE TWAKAKNKAI EKIRDVAAEL LDVYARRQAR PGESCEIDEE EYAQFAQGFP FEETVDQESA IHAVLADMRS PIAMDRLVCG DVGFGKTEVA MRAAFVAVNA GKQVVVLVPT TLLAQQHYEN FKDRFADWPV VTEVMSRFRT AKEQTQVLKQ LEEGKVDIVI GTHKLLQSEA KFENLGLLII DEEHRFGVRQ KEKIKALRAN VDILTLTATP IPRTLNMAMS GMRDLSIIAT PPAKRLAVKT FVRESDPATV REAILREILR GGQVYYLHNN VESIEKCAQG IIDLVPEARV VVAHGQMRER DLERVMSDFY HQRFNVLVCT TIIETGIDVP SANTIIIERA DTFGLAQLHQ LRGRVGRSHH QAYAYLMTPH PKRMTSDARK RLEAIDALED LGAGFMLATQ DLEIRGAGEL LGDEQSGHIS KIGFSLYMEM LEAAVKALKQ GKEPSLAQML NQQCEIELRI PALLPEAYVS DVNIRLSLYK RIAGCETQEA LDELKVELID RFGLLPEATK NLMEMTLYKH QATRLGATKI EVHAKGGSIE FSHDHVIDPG FIIGLLQSQP QIYRMEGPNK LKFSLTAETA KDRLDVVKLL LEQLSQHRLG DK
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