Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1940 |
Symbol | |
ID | 5078388 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 2224931 |
End bp | 2227447 |
Gene Length | 2517 bp |
Protein Length | 838 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640499101 |
Product | TonB-dependent receptor |
Protein accession | YP_001183462 |
Protein GI | 146293038 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0622221 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCAAAA GAACCAAAGT CGCGGCGGCT ATTAATGTCG CAATCGTTAC TTCCATCTCT GCGGGTACAT TTGTTGCGTC AAACTCATTC GCGGCTGAAG AAACGGCGAA AGTAGAGCGT ATTGAAGTAA CTGGTTCACG TATTCAACGT CAAGATATGG AAACAGCTTC TCCTGTGACC GTAATTGATG CTGCAGCGAT TAAAGCGGAA GGTTTTACCT CTGTGGACCA AATGCTACAA GTTCAAACCT CTATGGCAGG TGCTGCTGTA GGGTCAAGTA CAAATAATGG TGCTGATGGT GTTGCGCAGG TTGATTTACG CGGTATGGGA TCACAACGTA CATTAGTACT ATTAAATGGC CGCCGTATGG TGAACTCAGG TTCTGGAGCG GATAGCTCTG TGGATTTGAA TTCTATCCCT GTAGCTATGA TTGCCCGCGT TGAAATTCTG AAAGATGGTG CTTCAGCGGT TTACGGTTCT GATGCAATTG CGGGTGTAGT CAACATCATC ACCAAGAAAG ACTTTGAAGG CTTCCAATTA GATTTTAATG GTAGCGGTAC GGATAAAGGT GATGGTCGCA ATGGCGATGT TAGTGCATTA TACGGCTTTA ATACCGATGG TGGTAACTAC ACATTTGGTG CGGCGTTTTC GGACCGTCGC GATGTAATTC AAGCGGATCG TGATTGGACA GCAACAGGAG AAAGCTGGAG TATTCCGACA GGTGCATTGG ATTACATGGT TAAAGATGCA AATGGTAATT GGGTAGACCA AGAAGAAGTA TACGATTATA CACAAGACAG CTATTATCAA ACTCCGAGCG AACGTCGCAG CTTATTTGCA AATATGACCC AAGAGCTGGG TAATGATGTG GTATTAACTG CAGATGCAAT CTATACAAAT CGTCGTTCCC ATCAGCAAAT GGCCGCTCAG CCTGCAAATA TTGGTCTAAA TGTTTGTGGT AATGCTAATG TTCCAGCTGG TGCTCCATGC ATAACACTAG ACAGTGCTAT GACAGCCGCA GGTATAAAAG CAAATGATAA AGGTTTAGTT AACTACCGCC GTCGTACCAA TGAAGTCGGC CCTCGTATCT ACACTCAGGA TACCGATACT TGGCGCTTAT CTGGTGGTTT AGCGGGTACT TTAGATGTAC ATACGGGTAT GAATTGGGAT GTCACCTATA CCTATGGTAA AAACAAAGCT GAAACCGCAG TAGAAAACTC TATCAACGCT ACAGATATGG CCACTTCTAT CTATGCTAAC CCAGATGCGT GGTTTAGTGG TGCACCACTA ACACAACAAA CTATTAATGC TATCGGTTAT TCTGAGAAAG CAAATGGCGG CAATGAACAG CAAACATTGT CAGCGGGATT AAATGGTGAG TTATTTGATC TAAAAGCAGG TGCTGTTGGC TTTGCTATCG GTGCTGAATA TCGCCGTGAA AGTGGTTTTT ATAATCCCGA CCCAATTGTA GTTGCAGGTG AAAGTACTGC AGCACAGCAA GATCCAACGG ATGGCAACTA TAATGTTGTC TCTATTTTCC AAGAGGTCAG TGTACCATTT ACTGAGAAAT TAACAGGTGA ATTTGCACTG CGTTTAGATG ATTACTCTAC TTTCGGTAAA GCAACCACGT GGAAAATTGG TTTAACTTAT ACCGCTACCG ATGACCTGAT GGTTCGTACT GTGGCAGCGA CTGGATTCCG AGCACCAAGT GTAGCCGAAT TATATGGTGG TAACTCTGGT TCATTTGATT ATTTGAAAGA TCCATGGGGC AATATTAAAG ATGCTCAAAT CTTAGTAAAT CGCACATCAG ATCCAGATCT GCAACCTGAA GAGTCTGAAT CTTACACGGC CGGTTTAGTA TATTCACCGA GCTACATCGA TGGTATGTCT GTTACATTAG ATTACTGGCG ATTTAAGTTA GATAACGCTA TTGCACGTAT GGATACTCAA GTTGGTTTGA ATGCTTGTCA TGCAGGTGAT GCGTCAGCTT GTGAAACTTT CAATATCGGT GCAGGTGGTA ATTTAGATAA TTTAACTAAC GCACTGACTA ATGTTGGTTC ACAAGACACT AGCGGTATTG ATTTCAATTT AGCTTACAGC TTTGGATTGA TTGGTTTAGA CTGGAAAGTT AGTAATGACA CCACTTATCT AGTTAAGTTT GAGCAAGATG GTGAGGAATA TACGGGTACA ATCGATGGTA ACTTCGGTGC TTATGCGCGT GTTCGTAACA ACTTTAGCAT CTCTGCAGGC CAAGACGATT GGAGTGTAAT GTATTTTAAC CGTTATATTG GTGATATGCG TGACCTCGCA GAAGGTAATA AAGTAGGTGA TATTATTTAC CACAACATCT CAGGTACATA TCATATCAAT GATATGACAA CCGTTAGTTT AGGCGTTAAA AACTTTACTG ATGAAAAACC TGTTACTGTT TCTAACGGTA GCGATGGTGG TACAGTTCCA GAAGTTTACG ATACTATCGG TCGCACCATT TATGGTGGTG TAACAGTTAA GTTCTAA
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Protein sequence | MIKRTKVAAA INVAIVTSIS AGTFVASNSF AAEETAKVER IEVTGSRIQR QDMETASPVT VIDAAAIKAE GFTSVDQMLQ VQTSMAGAAV GSSTNNGADG VAQVDLRGMG SQRTLVLLNG RRMVNSGSGA DSSVDLNSIP VAMIARVEIL KDGASAVYGS DAIAGVVNII TKKDFEGFQL DFNGSGTDKG DGRNGDVSAL YGFNTDGGNY TFGAAFSDRR DVIQADRDWT ATGESWSIPT GALDYMVKDA NGNWVDQEEV YDYTQDSYYQ TPSERRSLFA NMTQELGNDV VLTADAIYTN RRSHQQMAAQ PANIGLNVCG NANVPAGAPC ITLDSAMTAA GIKANDKGLV NYRRRTNEVG PRIYTQDTDT WRLSGGLAGT LDVHTGMNWD VTYTYGKNKA ETAVENSINA TDMATSIYAN PDAWFSGAPL TQQTINAIGY SEKANGGNEQ QTLSAGLNGE LFDLKAGAVG FAIGAEYRRE SGFYNPDPIV VAGESTAAQQ DPTDGNYNVV SIFQEVSVPF TEKLTGEFAL RLDDYSTFGK ATTWKIGLTY TATDDLMVRT VAATGFRAPS VAELYGGNSG SFDYLKDPWG NIKDAQILVN RTSDPDLQPE ESESYTAGLV YSPSYIDGMS VTLDYWRFKL DNAIARMDTQ VGLNACHAGD ASACETFNIG AGGNLDNLTN ALTNVGSQDT SGIDFNLAYS FGLIGLDWKV SNDTTYLVKF EQDGEEYTGT IDGNFGAYAR VRNNFSISAG QDDWSVMYFN RYIGDMRDLA EGNKVGDIIY HNISGTYHIN DMTTVSLGVK NFTDEKPVTV SNGSDGGTVP EVYDTIGRTI YGGVTVKF
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