Gene Sputcn32_1889 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1889 
Symbol 
ID5080200 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand- 
Start bp2160282 
End bp2161292 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content46% 
IMG OID640499047 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_001183411 
Protein GI146292987 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0268796 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTATCC GTGTAGCAAT AAATGGCTAT GGCCGTATCG GTAGAAACGT ATTACGCGCT 
TTGTACGAAA GCGAAAAAGC TTATCCAATC AAGATTGTCG CTATTAATGA TTTAGGCGAC 
GCTTCCATCA ACGCTCACCT GACAAAATAC GATTCTGTTC ACGGTCGTTT CAATGCGAAA 
GTTGACCATG ATGCCGAAGC TATTTATGTG AATGGCGATA AGATCCTCAC TTTCCAAGAA 
CGTGATCCTG CAAAACTGCC ATGGGCAGAG CTACAGGTTG ACGTGGTTTT CGAATGTACC 
GGTATCTTCA CTTCTAAAGA AACCGTTCAA CCACATTTAA CCGCTGGCGC GAAGAAAGTG 
ATTATTTCTG CTCCAGGCAA AAACGTCGAT GCCACAGTTG TTTACGGTGT GAACAACAAC 
GTGCTGACGT CAGACATGAC AGTGATTTCA AATGCTTCTT GTACGACTAA CTGTCTAGCC 
CCTTTTGCTA AGCCGTTAAA TGACGAGATT GGTATCGAAT CAGGTTTGAT GACCACCATT 
CACGCTTATA CCAACGATCA GCGTTTATCT GACGTGTACC ACACAGATTT ACGTCGTGCC 
CGTGCTGCGG CACTGTCAAT GATCCCAACT AAAACGGGCG CAGCTGCTGC TGTCGGTTTG 
GTTGTACCTG AATTACAAGG TAAATTCGAC GGTTTAGCGG TTCGTGTACC TACAGTTAAC 
GTATCACTCG TGGATTTATC TTTCATCGCT GCCCGTGACA CGACAGTTGA AGAAGTGAAT 
GCCATTATCG AACGTGCTGC CAGCGTTGCG CCATTGAGCG AAGTGTTAGC GGTCAACAAA 
GAGCCATTGG TGTCTATCGA CTTTAACCAC AATGCGTTCT CTTCAAACTT TGACGCCACT 
CAAACCCGTG TTAACGGCCG TTTAGTGAAA GTGATGTCTT GGTATGATAA CGAGTGGGGA 
TTCAGTAACC GTATGTTAGA TAACGCGGTT GCCCTGATGA ACGCCAAATA A
 
Protein sequence
MTIRVAINGY GRIGRNVLRA LYESEKAYPI KIVAINDLGD ASINAHLTKY DSVHGRFNAK 
VDHDAEAIYV NGDKILTFQE RDPAKLPWAE LQVDVVFECT GIFTSKETVQ PHLTAGAKKV 
IISAPGKNVD ATVVYGVNNN VLTSDMTVIS NASCTTNCLA PFAKPLNDEI GIESGLMTTI 
HAYTNDQRLS DVYHTDLRRA RAAALSMIPT KTGAAAAVGL VVPELQGKFD GLAVRVPTVN 
VSLVDLSFIA ARDTTVEEVN AIIERAASVA PLSEVLAVNK EPLVSIDFNH NAFSSNFDAT 
QTRVNGRLVK VMSWYDNEWG FSNRMLDNAV ALMNAK