| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1847 |
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| Symbol | rnfD |
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| ID | 5079214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 2110165 |
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| End bp | 2111214 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640498997 |
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| Product | electron transport complex protein RnfD |
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| Protein accession | YP_001183369 |
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| Protein GI | 146292945 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
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| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000941791 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGTTTA AAATAGCCTC ATCACCCCAT GTAACACGAA ATCTGCATAC TTCAACTGTG
ATGCAGCGGG TGATTTTATG TTTACTGCCA GGCCTTGTGG TGCAGTGCGC CTTTTTTGGT
TGGGGCACGC TCGTTCAAGT ACTACTAGCA ATTATCGTCG CATTAAGTGC TGAAGCTGCG
GTAATGAAAC TGCGTCAGCG CAGTATCAAA GCCAGCTTAA GTGATAACAG TGCCATGCTG
ACCGCGATCT TGATTGGTGT GGCCATTCCC CCACTCGCCC CTTGGTGGAT GATCGTTATC
GGGACAGCTT TTGCTATCAT CATCGTCAAA CACCTTTACG GCGGTTTAGG CCATAACTTG
TTTAATCCAG CCATGGCCGC TTATGTACTA CTGCTAATTT CCTTTCCAGT GCAAATGACC
ACTTGGATTG CTCCAAGCAC AGTTGCCATG CACTCGCCGA GTGTGCTTGA TAGCTTGCAG
CTTATTTTCA ATATCGGTGC CAATGTGAAT ATGGACCAAT TTCGCCTAGG CATTGACGGT
GTAGCCATGG CAACACCGCT TGATACCCTA AAAACCGATT TATCCATGGG ATTAACCCGC
ACAGAAAGTA TGACAAAAGC CATTTTTGAT GGCGCTACGG GTGTAGGTTG GTTTTGGGTC
AATTTAGCTT ATCTTGCTGG CGGTTTAGTG CTGCTCAAAC TTAAGGCGAT TCGCTGGCAT
ATTAGCACTG GCGTATTAGC AGGGCTCTTT ATCGCTTCGA GTGTCGGTTT TTTACTGTCA
CCCGATACTC AAGGCAGCCC ATTATTCCAT CTATTTTCTG GCGCAACCAT GTTAGCGGCA
TTTTTTATTG CGACGGATCC TGTCACCGCC GCAACGAGTC CCCGTGGTCG AATTATCTTC
GGGACGTTAA TAGGTATATT GGTCTATATC ATTCGCACTC AAGGTGGCTA CCCTGATGCT
TTCGCCTTTG CCGTATTACT GGCAAACCTT TGTGCTCCCT TTATTGACTA TTACGTTCGT
CCACGTAGCT ACGGTCATTC AGCGGGCTAG
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| Protein sequence | MAFKIASSPH VTRNLHTSTV MQRVILCLLP GLVVQCAFFG WGTLVQVLLA IIVALSAEAA
VMKLRQRSIK ASLSDNSAML TAILIGVAIP PLAPWWMIVI GTAFAIIIVK HLYGGLGHNL
FNPAMAAYVL LLISFPVQMT TWIAPSTVAM HSPSVLDSLQ LIFNIGANVN MDQFRLGIDG
VAMATPLDTL KTDLSMGLTR TESMTKAIFD GATGVGWFWV NLAYLAGGLV LLKLKAIRWH
ISTGVLAGLF IASSVGFLLS PDTQGSPLFH LFSGATMLAA FFIATDPVTA ATSPRGRIIF
GTLIGILVYI IRTQGGYPDA FAFAVLLANL CAPFIDYYVR PRSYGHSAG
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