Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1704 |
Symbol | |
ID | 5079362 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 1942770 |
End bp | 1943855 |
Gene Length | 1086 bp |
Protein Length | 361 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640498853 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001183228 |
Protein GI | 146292804 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000249801 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAA TTATTCTAAT AATCGCCATA TTGGCGTCAG CATGGTTTGG ATATCAAGCA ATGCAACCCC AAGAGATAGC ACAAGCTAAG GTGAAATTAG TGCCAAATGT CGTGATAGCC ACTGCAGAAA TTGCGCCTGT ACGCGATGAA GTGGAAGCGA TTGGCACTAA CAAAGCATAT GAATCTGTGA CTATCACGCC TAAGGTGACC GATATGGTGA TGTCACTTAA CTTTGATGAT GGTGATATCG TTAAGAGAGG GGATTTGCTC GTACAACTAC AAAATGCAGA GCAAATTGCC AAAGTGAAAG CAGCTCAAGT AAAAGTGACT GATAATAAAA GGGAATTAAA TCGTATTAGT TCGCTAGTGA CGAGCCGTAC TGTGGCGGAG TTAGAGCGAG ATCGTCTGCA AACGCTGATA GATACTACCC GTGCTGAGCT TGAACAGGCA CAAGTATCAC TTAATGATCG CCGCATTTTG GCTCCTTTTG ATGGCCGTTT AGGCTTACGT CAAGTGAGCG TGGGCAGCTT AGTGACACCC GGAACTGAAA TTACAACACT TGATGATATT TCTAAGATTA AACTAGATTT TTCTGTCCCT GAGCGTTTTA TTCAAGAGTT ACGCCCTGGT AAATTGGTGG AAGCCACTGC TATCGCATTT CCTGATGAAA CCTTCAATGG CATTGTGACC TCCATAGATA GCCGTGTGAA TCCAACGACA CGGGCTGTGA TAGTTCGTGC TGAAATACCG AACCCCGATC TGCGTTTATT ACCTGGCATG TTAATGAAGG TCAAACTAAT TAAACGCAGC CGTGATGCCT TGATGTTACC TGAATCTGCC ATTATCCCTT TGCAGAGTAA TCATTTCGTT TATAGCGTCA ATAGCGATAA TGTGATTGAA CGTAAACAAG TGACTATTGG TATTCGTACC CGTGGCTGGG TTGAAATTCT CGATGGTGTG ACATCCGGTG AGAAAGTCGT CATACGTGGG CTGTTAAAAG TGCACCCAGG CGATAAGGTC ACAACTCAAT TAGCTGAAAA GTTTAGCTAT CTATCCACAG ATGCTGATGT GGAGCCAAGC GTATGA
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Protein sequence | MKKIILIIAI LASAWFGYQA MQPQEIAQAK VKLVPNVVIA TAEIAPVRDE VEAIGTNKAY ESVTITPKVT DMVMSLNFDD GDIVKRGDLL VQLQNAEQIA KVKAAQVKVT DNKRELNRIS SLVTSRTVAE LERDRLQTLI DTTRAELEQA QVSLNDRRIL APFDGRLGLR QVSVGSLVTP GTEITTLDDI SKIKLDFSVP ERFIQELRPG KLVEATAIAF PDETFNGIVT SIDSRVNPTT RAVIVRAEIP NPDLRLLPGM LMKVKLIKRS RDALMLPESA IIPLQSNHFV YSVNSDNVIE RKQVTIGIRT RGWVEILDGV TSGEKVVIRG LLKVHPGDKV TTQLAEKFSY LSTDADVEPS V
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