| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1671 |
|---|
| Symbol | |
|---|
| ID | 5079329 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 1903570 |
|---|
| End bp | 1904730 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640498820 |
|---|
| Product | homogentisate 1,2-dioxygenase |
|---|
| Protein accession | YP_001183195 |
|---|
| Protein GI | 146292771 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
|---|
| TIGRFAM ID | [TIGR01015] homogentisate 1,2-dioxygenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.991879 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTTT ATGTAAAACA GGGGCAGATC CCCCATAAGC GCCATATCGC ATTTGAAAAG
GAAAACGGTG AGCTTTACCG TGAAGAGTTG TTCTCAACCC ATGGCTTTTC CAATATTTAT
TCCAATAAAT ATCACCACAA CATGCCCACC AAAGCATTAG AAGTGGCGCC CTACAGCCTA
GGCCACGGTG CCAATTGGGA AGACTCGCTG GTCCAAAACT ATAAACTCGA TTCCCGCGAT
GCCGACCGTG AAGGTAATTT CTTCAGCGCC CGTAACAAGA TTTTTTATAA CAATGATTTA
GCTCTCTATA CCGCCAAAGT CACCGCCGAT ACCGACGAAT TTTACCGTAA CGCCTATGCC
GATGAAGTGG TTTTTGTCCA CGAAGGCGAA GGCACACTCT ACAGCGAGTA CGGCACGATT
AAGGTCCAAA AGTGGGACTA TCTCGTGATC CCACGTGGCA CCACTTATCA GCTTAAATTC
AACGATTACA GCAATGTGCG ACTTTTCGTC ATCGAGTCAT TCTCTATGGT GGAAGTGCCT
AAGCATTTCC GTAACGAGTA TGGTCAGCTG TTAGAATCGG CACCTTATTG CGAGCGCGAT
TTGCGTGTGC CCACATTGCA AGATGCTGTA GTTGAGCGCG GCGCCTTCCC CTTAGTGTGT
AAGTTTGGCG ATAAATACCA GCTCACCACA CTTGAATGGC ATCCCTTTGA TTTAGTGGGT
TGGGATGGCT GCGTTTACCC TTGGGCATTC AACATCACAG AATACGCACC CAAGGTAGGT
AAAATCCATT TACCACCTTC TGATCACTTA GTCTTTACCG CCCATAACTT TGTGATTTGT
AACTTCGTGC CACGCCCCTA CGATTTCCAC CCAAAATCGA TTCCCGCGCC TTATTACCAC
AACAATATAG ATAGCGACGA AGTTTTGTAT TACGTCGATG GCGACTTTAT GAGCCGCACG
GGCATTGAAG CGGGTTATAT GACCTTACAT CAAAAAGGTG TGGCCCATGG CCCGCAACCG
GGTCGCACCG AAGCCTCTAT TGGTAAAAAA GAAACCTATG AATATGCAGT GATGGTGGAC
ACATTCGCCC CACTGAAATT AACCGAACAT GTACAAAATT GCATGAGCAA AGACTACAAC
CGCTCTTGGC TAGAAGACTA G
|
|---|
| Protein sequence | MPFYVKQGQI PHKRHIAFEK ENGELYREEL FSTHGFSNIY SNKYHHNMPT KALEVAPYSL
GHGANWEDSL VQNYKLDSRD ADREGNFFSA RNKIFYNNDL ALYTAKVTAD TDEFYRNAYA
DEVVFVHEGE GTLYSEYGTI KVQKWDYLVI PRGTTYQLKF NDYSNVRLFV IESFSMVEVP
KHFRNEYGQL LESAPYCERD LRVPTLQDAV VERGAFPLVC KFGDKYQLTT LEWHPFDLVG
WDGCVYPWAF NITEYAPKVG KIHLPPSDHL VFTAHNFVIC NFVPRPYDFH PKSIPAPYYH
NNIDSDEVLY YVDGDFMSRT GIEAGYMTLH QKGVAHGPQP GRTEASIGKK ETYEYAVMVD
TFAPLKLTEH VQNCMSKDYN RSWLED
|
|---|
| |