Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1339 |
Symbol | |
ID | 5080966 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 1518411 |
End bp | 1519238 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640498471 |
Product | pseudouridylate synthase |
Protein accession | YP_001182866 |
Protein GI | 146292442 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTGGCTTG ATATGCCAGA TGATGAATTA GATCATGTGG TATTGGATAA TACCGATGAG CAAGCGCCCG ATATTCGAAT CCTCTTTGAA GATGAACATA TTGTAGCGAT CCATAAACCC GCAGGTTTAT TAGTACATCG CAGCTATTTG GCTCGCCGCG AGCGTTTTTT TGCCATGCAG TTAACTCGTG ATTTAGTTGG GTGTCATGTG TTCCCTGTGC ATCGTTTAGA TAGACCAACT TCTGGCGTGT TATTATTTGC CAAGAGCAGT GAAGTTGCTA ATGCGTTATG TGAGCAATTT GCTGAGCATT CCATAGAGAA ACAGTATCTT GCGCTAGTTC GTGGCAACAT GCATGAAAGT GGGATATTGG ATTATCCCCT CAAAGTTGAA CTTGATGAGC TTGGAGATAA ACATGCCCGC CAAGATAAAG CAGCACAGGA TGCCGTTACG GCTTTTAAGC CCTTACTCAA TGCTGAAATT CCATATCCAT CGGGACGATA TCCGACGAGC CGCTTTGCAT TAGTGCAACT TACCCCAAAG ACTGGACGTA AACATCAGCT TAGAAGACAC ATGGCACATT TACGCCATCC CATTTTAGGA GATACAACCC ACGGTGACGG AAAACAAAAT ACCTTTTTCC GCGAGCATTT CGGCATTAAT CGTTTATGGC TTATCGCGAA AAAGCTCACT TTCACGCATC CTGTCACTCA ATCTCGACTC AGTATTGAAA CCGAGCTTGA ACAACAATGG GAAACGGTGT TCACAGGACT TGGCTGGGAT GACGTTGTCT TGAGCAATGA TGCGCCATTT TTGATCGCTA AAAATTAG
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Protein sequence | MWLDMPDDEL DHVVLDNTDE QAPDIRILFE DEHIVAIHKP AGLLVHRSYL ARRERFFAMQ LTRDLVGCHV FPVHRLDRPT SGVLLFAKSS EVANALCEQF AEHSIEKQYL ALVRGNMHES GILDYPLKVE LDELGDKHAR QDKAAQDAVT AFKPLLNAEI PYPSGRYPTS RFALVQLTPK TGRKHQLRRH MAHLRHPILG DTTHGDGKQN TFFREHFGIN RLWLIAKKLT FTHPVTQSRL SIETELEQQW ETVFTGLGWD DVVLSNDAPF LIAKN
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