Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1275 |
Symbol | |
ID | 5081002 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 1435280 |
End bp | 1437148 |
Gene Length | 1869 bp |
Protein Length | 622 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640498407 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_001182802 |
Protein GI | 146292378 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000628386 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGTTTGG ACATTTCTCA GTTTCCTGTG TTGGCACAAG CCAATACCCC TAATGAACTC CGCCAACTTC CTCAGGCCCT TTTACCGCAA GTGGCCGATG AATTAAGGGA GTTTCTACTT AAGTCTGTTG GCATGTCCAG CGGACATTTC GCCTCTGGGC TTGGCACGGT AGAGCTTACG GTTGCCTTGC ACTATGTCTA CAACACCCCA TTTGATCGAT TAATTTGGGA TGTTGGGCAT CAGGCTTATC CCCATAAAAT CCTGACTGGT CGTCGGGATA AAATGCACAC TATTAGGCAA AAGAATGGTT TACATCCTTT TCCTTGGCGT GAAGAAAGTG AATACGACAC TTTTAGTGTC GGTCACTCAG GTACCTCAAT CAGTGCTGCC CTTGCCATGG CCGTTGCCGC AGAAAAAGAA CAGGCTGGGC GTAAAGTTGT TGCCGTGATC GGCGATGGCG CTATGACTGG CGGCATGGTG TTTGAAGCCA TGAACCACGC GGGCGACTTG CACAATGACA TGCTCGTGGT ACTGAACGAC AACGAAATGT CGATTTCAGA AAATGTCGGT GCCCTCAATA ATCACTTAGC ACAACTCATG TCTGGCCGTT TCTATACCAC ACTACGTGAA GGCGGTAAGA AAGTGCTCAA GGGTATGCCT GTCATAAAAG AAATGGCGAA ACGGACTGAA GAACATCTTA AAGGCATGGT TGTTCCGGGC ACTTTATTTG AAGAGTTAGG TTTTAACTAC ATAGGTCCAA TTGATGGCCA TGATGTAGAC GCATTGGTTG AAACTATGCG TAATATGCGT AACCTCAAAG GCCCACAGGT ACTTCACATC ATGACCAAAA AAGGTCGCGG TTACGAACCT GCGGAAAAAG ATCCTATTGG CTGGCACGCA GTACCTAAAT TCGATCCAAC ACAATTTAAA AAACCCAGTA CAACCCCTGG TTTACCAACC TTTTCACAGG TATTTGGTAA ATGGTTATGT GATATTGCCG AACAAGATGA CAAAGTATTA GGCATTACGC CCGCCATGCG TGAAGGCTCG GGGATGGTAG AGTTTTCCCA GCGATTCCCT AAGCAATATT TTGATGCAGC CATTGCCGAG CAACATGCAG TCACCTTAGG CGCTGGTTTT GCCTGTGAAG GCTATAAACC TGTTGTAGCA ATCTATTCAA CCTTCCTGCA ACGTGGCTAT GATCAGCTGA TCCACGATGT TGCTCTGCAA CGTTTACCCG TGTTATTTGC CATTGATCGT GGCGGTATCG TCGGTGCCGA TGGTCCAACC CACCAAGGGG CATTCGATTT AAGCTTTATG CGCTGCATCC CCAATATGGT GATTATGGCG CCGTCGGACG AAAACGAATG TCGCCAAATG CTCTATACCG GCTACTGTTA CAATGCAGGC CCGAGTGCGG TGCGTTATCC AAGAGGCAGT GCAACGGGGG CTACTCAAGT GGAAGCCATG ACAGCACTTC CTATTGGTAA AGGTGTCATA AAACGTGTAG GTAAGCGTAT TGCTCTGTTA AACTTTGGTA CAACACTCGC CTCAGCTTTA ACTGCGGCCG ATAACTTAGA TGCCACGGTT GTCGATATGC GCTTTGTCAA ACCGCTCGAT GCCGAGCTAG TGACGGAAAT GGCGCAGACC CACGATATCC TAGTCACCGT AGAAGAAAAT GCCATTATGG GCGGCGCGGG TTCTGGAGTA CTTGAATTGC TCCAAAAACT CAAAATGCCA AAACCTGTGC TGCAAATCGG TCTACCCGAT GAGTTTATTA AGCACGGTTC ACCAGAGGAA GTCACCCATG ACTTGCAACT GGATGCTGAA GGTATTTTGG CCCAAATAAA TGCTTATTTA GCACAGTAG
|
Protein sequence | MSLDISQFPV LAQANTPNEL RQLPQALLPQ VADELREFLL KSVGMSSGHF ASGLGTVELT VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDKMHTIRQ KNGLHPFPWR EESEYDTFSV GHSGTSISAA LAMAVAAEKE QAGRKVVAVI GDGAMTGGMV FEAMNHAGDL HNDMLVVLND NEMSISENVG ALNNHLAQLM SGRFYTTLRE GGKKVLKGMP VIKEMAKRTE EHLKGMVVPG TLFEELGFNY IGPIDGHDVD ALVETMRNMR NLKGPQVLHI MTKKGRGYEP AEKDPIGWHA VPKFDPTQFK KPSTTPGLPT FSQVFGKWLC DIAEQDDKVL GITPAMREGS GMVEFSQRFP KQYFDAAIAE QHAVTLGAGF ACEGYKPVVA IYSTFLQRGY DQLIHDVALQ RLPVLFAIDR GGIVGADGPT HQGAFDLSFM RCIPNMVIMA PSDENECRQM LYTGYCYNAG PSAVRYPRGS ATGATQVEAM TALPIGKGVI KRVGKRIALL NFGTTLASAL TAADNLDATV VDMRFVKPLD AELVTEMAQT HDILVTVEEN AIMGGAGSGV LELLQKLKMP KPVLQIGLPD EFIKHGSPEE VTHDLQLDAE GILAQINAYL AQ
|
| |