Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1235 |
Symbol | |
ID | 5081547 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 1375465 |
End bp | 1377198 |
Gene Length | 1734 bp |
Protein Length | 577 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 640498367 |
Product | diguanylate cyclase |
Protein accession | YP_001182762 |
Protein GI | 146292338 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTACTA CAGTGGATTA TGATCAAGCA CTTAATGAGC TTGATGTATT GTTACAATCA GATCTTGCGG CAGCACAGAA TAAATTAGCA GAGTATGAGA AGAATGTTGG TAAATTAACG GCTCTCCAAT TGGGAAGGTT AAGAATGGGG CGTTCTATCA GTTATATTTT TACAGGTGAT TACGCCAAAG CTTTAGAAGA TTTGAATCAG GCTGAATCTT TAGTGAGCAC TTCTGAACTA TTGTCATCAG TCTATAGTTA TAAATCAACT GCTTATATCG GTATGAGAGA TTATGACAAG GCCCTATCCT CTATTTCCAA GGCGCTTGCT TTAATAACGA GTATTGATGA TATCAGTATT AAACGTCATG CTTATCTGCG TATTGCAAAT CTTTATTATC AAATGAATGC TCTCAATGAT ATGGGTATCT ATGCCTATAA AGTATTACAG CTAGCAAAGG TAGGCGATGT TAGGGATATT TGTCATGCAA AGGTTCTGTA TGCAATTTAT TTTTTAGGGG TAAAAAAGTA CACAGAAGGA TTTGATGCTT TCGAAGATAG TCGCCAATAC TGCGAACTAA ATCAATTCCC TCTGCTAGCA ACAATTTCTC TTAAAGGTAA GGGCTTAGTC CTTCAGGAAC AAGGTGATTA TCAAGCGGCA AGGCCATTAT TATTAAATGC ACTTAAAGGT TATGAAGCAT TTAAGTTTCA GCTAGAAATC AGTCATGTGC ATGCATTGCT CGCTGAAAAT TATTTTGCAA CGGGTGATAG AGTTCAAGCG AAAACTCACG CCGTTAAAGT CCTCTCTTTT CCTGATGAAA ATAGCTATAT AGAGCATAAA CATATTGCGT ATCAGGTGTT TGCTCAGCTG ATGGCAGCAG ATAAAAATTT CGAGCAAGCC TATGAATACT CAAGAAAAGA GCAACATTAT AATCAATTGA TTTTTGATGA GTCCAAGATG AAGACTCTCG CTTATCAAGC TGCCCAATTT AACGCCGACG AGCAGTCGCG TGAAATCAAT TTACTCAATA AAGAGCGGGA ACTTTATATT GCTCAGCAAA TGGTAAAAGA GCGTGAATAC ACTAATATGT TGATGTTTTT GACTATATTG GTAGGGGGGC TATTTTTTCT CGGCATTTTA TTAGTCGTGG GAAGTTTACA AAAACGCAAG TTTATGCGGA TGGCAAGAAT GGATGCCTTG ACGGGGGTAC TCAATCGTGG CGCCGGACAA GAATTAGGTG AAAACTTATT TGTGCAGGCT ACCGCGCGTG GTGGTGATTT TTGTGTAATC TTATTCGACT TAGACTTTTT CAAACGAATT AATGACTCCT ATGGTCATGG GACAGGTGAT TGGGCGCTGA AGAAGGTCGT TGAGTCACTT AAATCCCAAA TCCGTAACGG TGATGTATTT GCTCGTATTG GTGGCGAGGA ATTTGCTATT TTATTACCCT ATGCTAATGA AGAAAAAGGA ATGGAAGTGG CTGAGCAATG TCGGGCGCGA ATAGAAGCGA TTGACACCCA ACACTCTGGG CACCATTTTA ACATTACTGC GAGTTTTGGT GTGAGTGGAT TGATGGCAGA TGATTTGAGC CTCGATCCCT TGTTGCACCG TGCGGATATG GCCCTTTATG CGGCGAAATC TAATGGGCGA AATACTGTTT ATTGTTACTC TGACATATTA AAGTCAGATA AGCAGGCGAC CAGTTTGGGG AATCATTTTG CCAGCATGTC GTAG
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Protein sequence | MATTVDYDQA LNELDVLLQS DLAAAQNKLA EYEKNVGKLT ALQLGRLRMG RSISYIFTGD YAKALEDLNQ AESLVSTSEL LSSVYSYKST AYIGMRDYDK ALSSISKALA LITSIDDISI KRHAYLRIAN LYYQMNALND MGIYAYKVLQ LAKVGDVRDI CHAKVLYAIY FLGVKKYTEG FDAFEDSRQY CELNQFPLLA TISLKGKGLV LQEQGDYQAA RPLLLNALKG YEAFKFQLEI SHVHALLAEN YFATGDRVQA KTHAVKVLSF PDENSYIEHK HIAYQVFAQL MAADKNFEQA YEYSRKEQHY NQLIFDESKM KTLAYQAAQF NADEQSREIN LLNKERELYI AQQMVKEREY TNMLMFLTIL VGGLFFLGIL LVVGSLQKRK FMRMARMDAL TGVLNRGAGQ ELGENLFVQA TARGGDFCVI LFDLDFFKRI NDSYGHGTGD WALKKVVESL KSQIRNGDVF ARIGGEEFAI LLPYANEEKG MEVAEQCRAR IEAIDTQHSG HHFNITASFG VSGLMADDLS LDPLLHRADM ALYAAKSNGR NTVYCYSDIL KSDKQATSLG NHFASMS
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