| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1155 |
|---|
| Symbol | |
|---|
| ID | 5081565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1297341 |
|---|
| End bp | 1298273 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640498286 |
|---|
| Product | sigma E regulatory protein, MucB/RseB |
|---|
| Protein accession | YP_001182682 |
|---|
| Protein GI | 146292258 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3026] Negative regulator of sigma E activity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00412156 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCGTCTAA TCCTGTTGGC TTTATTAGCC TTGGTATTTC CTGCAATGGC GCAGGAAGAT
ATGCCCGCCA AAGTCTGGCT CGAAAAAATG AGTCAGGCTT TAAAAGAAAA AGAGTTTAAA
GCATCAATTA TTCAACTTCA GGCCGATCAT ATTCGGCCTT TGGTTTATAT CCATGGTAAG
GTTAATAATC AAGAAGTTGC TTTTCTAGAG TACCTTAATG GCCCACCTAA AAATGCCGTT
CGAGTGGGTA ATAGAGTCAC TTTTATTGAG CATGACCAAC CTGCCTATAG CATCATATCT
AACCATATTC AGGGTGTTTG GCCCGCCGTA TTTTCTGCCA ATACGGGAGA TTTAGAAGTC
GGTTACCAGT TTGTCTTGGG TGGTCGAACT CGGATTGCTG GGCGTCCTGG ACAAATGATC
CGTTTATTAC CTAATGATGA ATATCGTTAT GGTTTTCAAG TTTGGCTCGA CATGGATACA
TTTCTCCCTT TGAGATACGA CATGCTGACT CAAGATAAAC AATTACTTGA GCAGATTATG
GTGATTGAAT TGATTGAGTT TAGTGAGCCT CCCTCTATCT TACAGGAAGC TTATAAGCAA
GAGTGGCCCG CGGTTATTGA TCAAGCAGAA CGTCAAGATG GTCAGAATTG GCAATTTTCT
TGGTTACCGG CAGGATTTAC AGTGGTTGTT CGAGATCATC ATCGCTTAAT TGGTAGCCAT
GAGGCGGTTG AATATATCGC ATTGACTGAT GGGCTTGCCA ATATTTCAGT TTACGTTGCT
CGAGCAGGGA CAAGCCAATT GCCGGAAGAG TTGATTACCC GTAATGGCCT ATCGCTTGTT
TCTGAAAAGG TAGGTAATGC AGAAGTTGTT GCCGTCGGTA AAGTTCCTAC CGCGACACTC
GCTCGCATTG CTAAAAGCCT AACATTGCAA TAG
|
|---|
| Protein sequence | MRLILLALLA LVFPAMAQED MPAKVWLEKM SQALKEKEFK ASIIQLQADH IRPLVYIHGK
VNNQEVAFLE YLNGPPKNAV RVGNRVTFIE HDQPAYSIIS NHIQGVWPAV FSANTGDLEV
GYQFVLGGRT RIAGRPGQMI RLLPNDEYRY GFQVWLDMDT FLPLRYDMLT QDKQLLEQIM
VIELIEFSEP PSILQEAYKQ EWPAVIDQAE RQDGQNWQFS WLPAGFTVVV RDHHRLIGSH
EAVEYIALTD GLANISVYVA RAGTSQLPEE LITRNGLSLV SEKVGNAEVV AVGKVPTATL
ARIAKSLTLQ
|
|---|
| |