| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1139 |
|---|
| Symbol | |
|---|
| ID | 5081649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1282022 |
|---|
| End bp | 1282933 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640498270 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001182666 |
|---|
| Protein GI | 146292242 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000235154 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGTT TACCTAGCCT CAAGAATTTA TTTTATTTGG TGAATCTCCA TCAAGAGCAA
AATTTTAACC GCGCTGCTAA GGTGTGTTTT GTTAGTCAGT CGACGTTATC CAGTGGGATC
CAAAATTTAG AAGAGCAACT AGGTCATCAA TTGATCGAAC GTGATCACAA ATCATTTATG
TTTACTGCTA TTGGTGAAGA AGTTGTACAA CGTTCCCGTA AGATCCTCAC CGATGTCGAC
GACTTAGTTG AGCTAGTTAA AAATCAAGGC GAGCCAATGA CGGGTGATAT TCGCCTAGGC
TGTATTCCTA CGATTGCCCC TTTCCTATTG AGTCGCGTTG TGCGCCAATG TCAGCAAGCT
TATCCTGCGA TGAGTTTGTT GCTGAAAGAA GATACAACTG ACCGTTTGTT AGATGCTTTA
GGGAAAGGAG AGTTAGATCT ATTGATCCTT GCCTTACCAG TTGATACTAG TGGTTATCAC
AGTATGAAGG TTGGCATTGA CCCATTCAAA ATGGTCATCC ATAAGGATTT AGCTGGAGAA
ATTCATCAAC CGATCGACTA TCAAGCCTTA CCGGATGAGA GTATTTTTTT ATTGCAAAGT
GAACATTGCA TAACAGGCCA TGCAATCACA GCCTGTCAGT TGGGGGATAG TGCCAAGGTA
AACCCATTTG CCGCGACCAG TTTGCATACC TTAGTACAAA TGGTAAACAG TAAATTAGGG
ACGACTTTCT TACCACAAAT GGCGATTGAT GCTGGCATTC TAAACGATAC CGATTTAGTG
GTAATGACAC CACCAGGTGA GGCTCCTTAC CGAGATATAG GACTCGTTTG GCGACAAACT
ACCAGCCGAA TTTTAACTTT CCGCACCTTA GGTTTAATGA TCCAAAAGTT ACTCACTAAA
GACGAAGATT AA
|
|---|
| Protein sequence | MKSLPSLKNL FYLVNLHQEQ NFNRAAKVCF VSQSTLSSGI QNLEEQLGHQ LIERDHKSFM
FTAIGEEVVQ RSRKILTDVD DLVELVKNQG EPMTGDIRLG CIPTIAPFLL SRVVRQCQQA
YPAMSLLLKE DTTDRLLDAL GKGELDLLIL ALPVDTSGYH SMKVGIDPFK MVIHKDLAGE
IHQPIDYQAL PDESIFLLQS EHCITGHAIT ACQLGDSAKV NPFAATSLHT LVQMVNSKLG
TTFLPQMAID AGILNDTDLV VMTPPGEAPY RDIGLVWRQT TSRILTFRTL GLMIQKLLTK
DED
|
|---|
| |