| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1035 |
|---|
| Symbol | |
|---|
| ID | 5081737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1154627 |
|---|
| End bp | 1157461 |
|---|
| Gene Length | 2835 bp |
|---|
| Protein Length | 944 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640498165 |
|---|
| Product | peptidase M16 domain-containing protein |
|---|
| Protein accession | YP_001182562 |
|---|
| Protein GI | 146292138 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0612] Predicted Zn-dependent peptidases |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAAAAAT GGATATTAGC AGTCGCGATT TCTGCTGCTC TTTCAGGTTG TGCGGCACAA
AAGACGACAA CGAATTTGCC TGCTGGCGTG AAATTAATTG AAAGTGTGCA ACTAGCCGAC
TCACAAGTTG GTATTCCTTA TAAAAAGTAT CAATTAGCCA ATGGGTTAAC TGTTATCCTG
CATCAGGATG ATTCCGATCC TTTAGTGCAT GTTGACGTGA CTTATCATGT TGGTTCCGCC
CGTGAACTTG CGGGACGATC CGGTTTTGCA CATCTGTTTG AACATATGAT GTTTCAAGGC
TCGGAGCATG TTGCCGATGA ACAGCATTTT GAAGTCGTTA CCGAAGCTGG CGGTACGCTA
AATGGATCAA CGAACACTGA CAGAACAAAC TATTTTGAAA CCGTGCCGAG CAATCAATTA
GAAAAAATGT TGTGGTTAGA GTCGGACAGA ATGGGATTTT TATTGCCTGC ACTGACCAGC
GAAAAATTTG AAGTGCAGCG TGAAACGGTT AAAAACGAGC GGGCACAACG TATCGATAAT
CAGCCTTATG GCCGTATGAG CGAGCGATTT AACCAAGCTC TATACCCAGT TGGACACCCA
TATTCTTGGC CTGTTATTGG GTGGCCGGAT GATCTGAATC GCGCAACGGT CGATGATGTT
AAACACTTTT TCCAACGTTG GTATGGCCCT AATAATGCGA CGTTAACCAT AGGCGGCGAT
TTCGATGAAA TGCAAGCCTT AGCATGGGTG AATAAGTATT TTGGTGAAAT ACCTCGAGGC
CCTGAGGTGT CGCCAGAGCC TAAAACATCG GTGAACTTAG ATAAGACTCG TTATATCTCG
ATGGAGGATA ATGTTCACTT GCCCCTTATT CGTATTGGCT TCCCGACAGT GTATGCAAGG
CACCAAGATG AAGCCGCGCT GGATCTTTTA GGGAATATTT TAGGCGGTGG TAAAACGTCT
TTAGTGTATA AAAACTTAGT AAAAGAAGGG CATGCCGTCC AAGCGAGTGT GAGCCATCCA
TGCCAAGAGT TGGCCTGTCA AATGTCAATT TATGCACTGG CAAACCCAGA AAAAGGCGGT
AAGCTTGCAG ATCTTGAGCA GCTCATCCTT GACTCTATCA ATGAGTTTGA ACAGCGCGGT
GTGACCGATG AGGATCTGCA AAAAGTCAAA GTGCAGTTTG AAGCGGATAC TATTTTTGCT
TTGCAAAGTG TCAAAGGCAA AGTATCAACT TTAGCTTTAA ACCAAACCCT GTTTGATAAT
CCCGATTTGA TTTCGGCTGA TCTTACACGC TACGAGAGCG TCACTAAAGA CGACGTGATG
CGTGTTTTTA AGCAATATAT TAAAGATAAG CCGATGGTGG TTATGAGTGT TGTCCCCCAA
GGTATGACTG CATTGGTGGC TCATCCTGAT AATTTTATCC CCACGGATTT ACCAATAGCC
GAAACTGCCG TGGAAGGGCC GTTGCCAACG GCTAAGCTAG TATCAAGTTT TGACCGCACT
AAGATGCCGA TATCGAGTGC TGCGCCCATG CCAAAGGTGC CCAAAATATG GACGACTCAG
TTAGCCAATG GTATTGAGGT GATGGGCACA CAAAGCACTG AAACACCAAC GGTTGAATTA
ATCGTTTATC TTAATGGTGG TCATCGATTA GTACCCGTGG AAAAGGCCGG ACTTGCGAGC
CTTACTGCCG AAATGCTGAA TGAATCCAGC CAAAAACGTA GCACTGAGGC ATTATCACAG
GCCTTGGAAA TGTTAGGTAG CACAGTCGAT TTCAGTGCCT CCGAATATCA AAGTACCATC
AAAATCTCGA CACTGACCGA GCATTTAGAT GAAACACTTG CGATTATGGA GGAAAAGCTC
TTTCAACCTG GTTTCACTGA TGCCGATTTT GCTCGAGTAA AACAGCAACA GTTACAGCAA
ATTCAGCATA TGCAGTCAAA TCCAAGTTAT TTGGCTAACT CGGCCTTGTT TAGCCTGTTA
TATGGTAAAA ATAACGCATT AGGTGTGAGT GATTCAGGCA CATTAGATTC TGTTGCTGCG
CTGACGTTAG ATGATGTTAA AGCCTTTTAT GCAGAGCAAT ATCGTGGTGC TAATGCAAAA
ATTATTACCG TAGCCAATTT GCCTGAATCA GCTCTCTTGC CAAAGTTAGC GGGATTAAGC
CGATGGAAAG GGGAGGCCAC ATCGATTCCA GCCTTGAAAC CATTCCCAGA ACTTAAAGGT
GGCACTATTT ATCTGATTGA TAAACCGGGC GCTGCGCAGT CGGTGATCAA TATTGCTAAA
CGTGCTTTGC CTTATGATGC GACGGGGGAT TACTTTAAAG CTTATTTGAT GAATTATCCG
CTGGGTGGTG CTTTTAATAG CCGTATTAAT TTAAATCTAC GAGAAAATAA GGGCTATACC
TATGGCGCCC GCACTGCTTT TTCAGGCGGA GCGGAGGTTG GTAATTTTGT GGCATCAAGC
GATGTACGAA CCGATGTAAC CGCTAAAGCT GTTGCTGAAT TTATTAAGGA AATTAATGCT
TATCAGCAAA TGGGGATGAC GGATGCTGAA CTTGCTTTTA TGCGTAACTC GGTTTCCCAG
GGGCAGGCTC TGGACTATGA AACCCCTTAC CAAAAAGCGG GCTTTATGCG GATGATCCAG
CGCTATCAGT TAAGCAAAGA TTTTACCGCT CAGCAGGATA AAATCATTAA TACTGTAACA
AAAGATGAAC TCAACTCCCT TGCTGCCGCT GAGCTCAATA TCTCGCAAAT GGTGATCTTA
GTGGTAGGAG ATAAAGCAAA AATTGAGGCG GATTTATCGA CATTGGGCTA TCCAATTGAA
ACCTTAGTGT TGTAA
|
|---|
| Protein sequence | MKKWILAVAI SAALSGCAAQ KTTTNLPAGV KLIESVQLAD SQVGIPYKKY QLANGLTVIL
HQDDSDPLVH VDVTYHVGSA RELAGRSGFA HLFEHMMFQG SEHVADEQHF EVVTEAGGTL
NGSTNTDRTN YFETVPSNQL EKMLWLESDR MGFLLPALTS EKFEVQRETV KNERAQRIDN
QPYGRMSERF NQALYPVGHP YSWPVIGWPD DLNRATVDDV KHFFQRWYGP NNATLTIGGD
FDEMQALAWV NKYFGEIPRG PEVSPEPKTS VNLDKTRYIS MEDNVHLPLI RIGFPTVYAR
HQDEAALDLL GNILGGGKTS LVYKNLVKEG HAVQASVSHP CQELACQMSI YALANPEKGG
KLADLEQLIL DSINEFEQRG VTDEDLQKVK VQFEADTIFA LQSVKGKVST LALNQTLFDN
PDLISADLTR YESVTKDDVM RVFKQYIKDK PMVVMSVVPQ GMTALVAHPD NFIPTDLPIA
ETAVEGPLPT AKLVSSFDRT KMPISSAAPM PKVPKIWTTQ LANGIEVMGT QSTETPTVEL
IVYLNGGHRL VPVEKAGLAS LTAEMLNESS QKRSTEALSQ ALEMLGSTVD FSASEYQSTI
KISTLTEHLD ETLAIMEEKL FQPGFTDADF ARVKQQQLQQ IQHMQSNPSY LANSALFSLL
YGKNNALGVS DSGTLDSVAA LTLDDVKAFY AEQYRGANAK IITVANLPES ALLPKLAGLS
RWKGEATSIP ALKPFPELKG GTIYLIDKPG AAQSVINIAK RALPYDATGD YFKAYLMNYP
LGGAFNSRIN LNLRENKGYT YGARTAFSGG AEVGNFVASS DVRTDVTAKA VAEFIKEINA
YQQMGMTDAE LAFMRNSVSQ GQALDYETPY QKAGFMRMIQ RYQLSKDFTA QQDKIINTVT
KDELNSLAAA ELNISQMVIL VVGDKAKIEA DLSTLGYPIE TLVL
|
|---|
| |