| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1021 |
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| Symbol | |
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| ID | 5081720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 1134461 |
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| End bp | 1135222 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640498149 |
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| Product | putative lipoprotein |
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| Protein accession | YP_001182549 |
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| Protein GI | 146292125 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4105] DNA uptake lipoprotein |
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| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000015232 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTATAAAT TTTCCAAAGG CGTTACCTTA GTCCTATTTT CACTAGCGTT ATCAGCCTGT
AGCAGCAGCC CTGATGATAG CGATATTGCA GCCAAAACCT CACCTGATGT GCTTTATTCT
CAGGCAAGAA CCTCCATGGA GCTTGGTAAT TACGCTAAAG CTGTCCGTTC TTTGGAAGCG
CTAGACTCTC GCTTCCCTTT CGGACCGCAT AAAACCCAAG TCCAATTAGA CTTGATTTAT
GCTTATTACA AAATGGATGA TGTCGCTTCT GGTATCGCCA ATATAGACAG ATTTATCCGT
CTTAACCCAA CCCATCCTAA TATCGACTAT GTCTACTATA TGCGAGGACT GGTCAACATG
CAGGCTGATA ACTATCTATT CCATGATATG TTGAGTATTG ATAGAACTGA CCGCGATCCT
AAAAATGCCC AAGATGCCTT TAAAGATTTT GACCGTTTAA TCAAAACCTA TCCTAACAGC
AAATATGCTG CTGATGCACA AAAGCGTATG TTTTCGCTGA AAAATCGCTT GGCAAAATAT
TCCATTCAAG TTGCCGAATA TTATCTCAAA ATGAACGCTT GGAGCGCCGC GGCAATCCGA
GCTCAATCAG TACTAGAAAC ATATCCTGGC ACCCCTTCAA CAGAGCGGGC CTTAGAAATA
ATGATAGAAG CTTACGGCGA ATTAGGTCAG AACCAGCTGA AGCAAAACGT GCTCATGGTA
ATGCAAGCTA ACTATCCAAA CAATGAAATC TTATCAAACT AG
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| Protein sequence | MYKFSKGVTL VLFSLALSAC SSSPDDSDIA AKTSPDVLYS QARTSMELGN YAKAVRSLEA
LDSRFPFGPH KTQVQLDLIY AYYKMDDVAS GIANIDRFIR LNPTHPNIDY VYYMRGLVNM
QADNYLFHDM LSIDRTDRDP KNAQDAFKDF DRLIKTYPNS KYAADAQKRM FSLKNRLAKY
SIQVAEYYLK MNAWSAAAIR AQSVLETYPG TPSTERALEI MIEAYGELGQ NQLKQNVLMV
MQANYPNNEI LSN
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