Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_0922 |
Symbol | |
ID | 5081834 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 1025836 |
End bp | 1026564 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640498047 |
Product | pseudouridine synthase |
Protein accession | YP_001182450 |
Protein GI | 146292026 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCTTAG CAAAATACCT TGCCCAATGC GGCATTGGCT CTCGCCGTGA AGCCTGCCGT TTGATTAATG CTGGGCGTAT TACACTTAAT GGCAAGATAG CCAAACATAC CAACCTAGTT CAACGCGATG CTCAAGGTCT ATGCCTTGAT AGCATTTGCT TAGATGCAGA GCCCATAGTT GAAACAGAAG CACTCGCTTA TTGGATATTC AATAAAGCTG TCGGCACCGA TTGCCGTTTG CTTGAACAAG ATAAAACGAG CTTATTGCAT CTGCTTCCCA AAGCGCCAAG ACTCTACCCC GTCGGCAGGC TAGATAAGGA CTCCCGCGGC CTGTTACTGT TAACTAACGA TGGTGAGCTG ACCCATAAAC TGATGCACCC CAGCTTTGCC CACAGTAAAA CCTACCATGT GCGCCTCGAT AAGCCATTCA CTGATGATTT TGTAGAACAA ATGGCAAGTG GAGTGCGTTA TAAAGATCTG CAAACCCTGC CCTGCCAAGT ACGCCGCCTC AGTTTGGACA GCTTTGAAAT CGTGCTGACT CAAGGATTAA ATCGACAAAT TCGGCATATG TCCAAGGCAC TCGGGTATCG CGTTATCGAT CTTGAGCGCG TCGCTATAAT GGCGCTGAAT TTACGTGAAT TAGCATCTGG TGAGTTACCA GAAGGGCAAA TGCGGCCATT AACACCACAG GAAACCACAG TGCTTAAAAC GGCACTGGCT ACAGGGTAA
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Protein sequence | MRLAKYLAQC GIGSRREACR LINAGRITLN GKIAKHTNLV QRDAQGLCLD SICLDAEPIV ETEALAYWIF NKAVGTDCRL LEQDKTSLLH LLPKAPRLYP VGRLDKDSRG LLLLTNDGEL THKLMHPSFA HSKTYHVRLD KPFTDDFVEQ MASGVRYKDL QTLPCQVRRL SLDSFEIVLT QGLNRQIRHM SKALGYRVID LERVAIMALN LRELASGELP EGQMRPLTPQ ETTVLKTALA TG
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