| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0889 |
|---|
| Symbol | |
|---|
| ID | 5081900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 990269 |
|---|
| End bp | 991672 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640498014 |
|---|
| Product | branched-chain amino acid transport system II carrier protein |
|---|
| Protein accession | YP_001182417 |
|---|
| Protein GI | 146291993 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1114] Branched-chain amino acid permeases |
|---|
| TIGRFAM ID | [TIGR00796] branched-chain amino acid uptake carrier |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAAGACA ATCAGATGAG TATCGGGGAT ACATTAGGTT TAGGTTTCAT GACCTTCGCG
TTTTTTTTAG GGGCGGGAAA TTTAATATTC CCACCGTTTG CTGGCATGTT AGCTGGTGAG
AATATGCCTC TTGCTATGCT AGGCTTTTTG ATTACCGCCG TAGGTTTACC TTTAGTGGGA
CTCATCGCAG TCGCTAAGGC TCAAGGTAAG GTTATGACAA TGTTGCCAGT ATTTGCAGCA
ACGGCATTGG CGATTGCGAT TTATATTATT ATTGGTCCTG CATTTGCGGC GCCACGAACA
GGTTTAGTGG CTTATGAGAT TGGCGCTAAA CCTTTTATCG ATAACACGAC CACAACAATG
TTAGTCGGTA ATGTTGAGCT TAACCTGTCG CAACTTATCT ACACGTTGTG CTTCTTTACA
GTCACTATGT TACTCGCGTT GTTTCCTGGC AAGTTGCTTG ATAGTGTTGG TAAAGTTCTG
ACCCCTATTC TACTGTTGTT ACTCGTTAGC CTTGCTGCGT CTGTACTATT TTTACCTGCA
TCAGATGTAG GGCTGGCCGT GGGGGATTAC CAGAAACATC CTCTGACGAA AGGTATTCTG
GAAGGCTACA ACACCATGGA TACTTTGGCC TCACTCATGT TTGGTATGTT GATTATTGAT
ATTTTGCGTA AAAAGGGCAT TGAACAGCCG AGTGCGCAGA CAAAGTACCT CATTCGCGCC
GCCTTTATCG CTGCCGCCGG TCTTGCCTTT GTTTATGTGT CATTGTTCTT TTTAGGTGCG
ACGGCGGGTG ATATTTCCGT AGGCGCTAAA AACGGTGGTG AAATATTAAC AAACTATGTT
ACCCACGAGT TTGGCAGCCT AGGTACTTTG TTGCTGTCGG CTGTGGTGTC TCTGGCCTGC
TTAACTACGG CGGTGGGACT TGTGAGTGCA TGCTCTGAGT TTTTTAATGA GTTAATGCCA
AAACTTTCTT ATCGTTTCTT AGTGGTTGTG TTAAGTGCTA TTTGTGCCTT GATTGCTAAC
GTCGGGCTTT CACAACTGAT TAATATCAGT ATTCCGGTGT TGATGGCCGT TTATCCTGTG
GCGATTGCAC TGGTTGCGGT GACGTTCTTA ACCGAATATT TTCCACGGCC ACAGTTTGCT
CACCGTATGA CTCTCTCTGT CGCGCTGCTA TTTGGTATCT TCGATGGGAT GAAAATCGCA
GCTAAAAGTC TAAAGGGTGA AGATGGTAAA GGCGTGACGG AAGCGGCGCA GAGCTTTATC
GATGTGGTCA GTGGTATGTC ACCCACATTG TCGATTTTAC CTCTGTATGA AGAGGGGATG
GCTTGGTTAT TGCCAACCTT AGTGGTGATT GTGTTGTGTT TAATTATTCG TGGTGGCGGT
GCAAAAACGG TCACTGCGGC ATAA
|
|---|
| Protein sequence | MQDNQMSIGD TLGLGFMTFA FFLGAGNLIF PPFAGMLAGE NMPLAMLGFL ITAVGLPLVG
LIAVAKAQGK VMTMLPVFAA TALAIAIYII IGPAFAAPRT GLVAYEIGAK PFIDNTTTTM
LVGNVELNLS QLIYTLCFFT VTMLLALFPG KLLDSVGKVL TPILLLLLVS LAASVLFLPA
SDVGLAVGDY QKHPLTKGIL EGYNTMDTLA SLMFGMLIID ILRKKGIEQP SAQTKYLIRA
AFIAAAGLAF VYVSLFFLGA TAGDISVGAK NGGEILTNYV THEFGSLGTL LLSAVVSLAC
LTTAVGLVSA CSEFFNELMP KLSYRFLVVV LSAICALIAN VGLSQLINIS IPVLMAVYPV
AIALVAVTFL TEYFPRPQFA HRMTLSVALL FGIFDGMKIA AKSLKGEDGK GVTEAAQSFI
DVVSGMSPTL SILPLYEEGM AWLLPTLVVI VLCLIIRGGG AKTVTAA
|
|---|
| |