Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_0715 |
Symbol | |
ID | 5082023 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 804514 |
End bp | 805989 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640497840 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_001182244 |
Protein GI | 146291820 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000180568 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGCGT CACTCCAGCT CAAACTGGGC CAACAGTTAA CCATGACGCC ACAGTTACAA CAGGCGATTC GTCTGTTGCA GCTCTCGTCA TTGGAATTAC AACAAGAGAT CCAGCAAGCC TTAGACTCTA ATCCTCTTCT TGAGCTGGAA GATGAGCAAT TTGACGCACC TACAGAACGC AACCAGAATT TATCAGACAC CGATTTCAGC GAATCAAGCC CACTGCCCCC CGAACAAGAT AGCTCCACTG TTGATACCGC AGAATCCTTG ACCAAAGAAT CTATGCCAGA TGAACTGCCC ATGGATACCA CTTGGGATGA AGTATTTACC GCCTCACCCA ACTCAGGTTC GGGTGGCAGT AGAGAAGACG ATATGCCCTT TCAGGGGGAA ACCAGCGAGG GCCTGCATGA ACATTTAGAA TGGCAAAAAA ACCTCACCCC CTTCTCTGAA ACCGATCTTG CCATTGCCAC TGCCATTATT GATGCTATTG ATGATCAGGG CTATCTCACC CAAAGTACTG AAGATATTCT CGAAGCGATG GGAAATCCTG AGATTGAGTT AGATGAAGTC GAAGCTGTAC TTAAACGTAT CCAACACTTT GATCCTGTTG GTGTTGCAGC AAGAGATCTC AGCGAATGTT TACTGATCCA GCTATCCCAT TTTTCGCCGG ACACACCACA TCTCGAAAAT GCCCGCATGT TGATCAAAGA TCATTTAGAT CTGATCGCTG CTCGCGATTT TAGGCTGTTA ATGCGTAAAA CCAAACTGAA GGAAGATGAA CTTCGGGATG GTATCGCACT GATACAAACG CTGAACCCTC GCCCAGGTTT GTTGATCACA CCGATGGATG AAGAATATGT GATCCCAGAT GTGTCGGTAT CGAAGAAAAA TGGCCGTTGG GTGGTAGAAC TCAACCCAGA TTGCATGCCC AAAATCAATG TAAACCAGCA ATATGCCGCC ATGGCTCGCA GCACAAAAAG CCAAGCAGAT AGCCAATTTA TTCGTGGCCA TCTGCAGGAA GCCAAATGGT TTATCAAGAG CTTAGAAAGT CGTAACGACA CCTTACTCAA AGTGGCCAAT TGTATCGTTC AATACCAACA AGGCTTCTTT GAGTACGGTG AAGAAGCCAT GAAACCTATG GTACTTAACG ATATAGCCGA AGCGGTTGAA ATGCATGAGT CCACCATCTC ACGGGTCACA ACTCAAAAAT ACATGCATAC CCCTAAGGGA CTTTTTGAAC TAAAATACTT CTTCTCAAGC CATGTCGGGA CTGACGATGG CGGTGAGTGC TCATCCACAG CAATCAGAGC CTTTATTAAA AAACTGGTTG CCGCGGAAAA CCAGAAAAAA CCATTAAGCG ACAGTAAGAT GGCACAACTT CTGGCAGAAC AGGGAATAAA TGTTGCGCGC AGAACCATTG CGAAGTATCG AGAAGCAATG CTTATTCCCC CTTCCAATCA GCGTAAAAGT TTATAG
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Protein sequence | MKASLQLKLG QQLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLELE DEQFDAPTER NQNLSDTDFS ESSPLPPEQD SSTVDTAESL TKESMPDELP MDTTWDEVFT ASPNSGSGGS REDDMPFQGE TSEGLHEHLE WQKNLTPFSE TDLAIATAII DAIDDQGYLT QSTEDILEAM GNPEIELDEV EAVLKRIQHF DPVGVAARDL SECLLIQLSH FSPDTPHLEN ARMLIKDHLD LIAARDFRLL MRKTKLKEDE LRDGIALIQT LNPRPGLLIT PMDEEYVIPD VSVSKKNGRW VVELNPDCMP KINVNQQYAA MARSTKSQAD SQFIRGHLQE AKWFIKSLES RNDTLLKVAN CIVQYQQGFF EYGEEAMKPM VLNDIAEAVE MHESTISRVT TQKYMHTPKG LFELKYFFSS HVGTDDGGEC SSTAIRAFIK KLVAAENQKK PLSDSKMAQL LAEQGINVAR RTIAKYREAM LIPPSNQRKS L
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