Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_0560 |
Symbol | |
ID | 5080598 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 608452 |
End bp | 610128 |
Gene Length | 1677 bp |
Protein Length | 558 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640497687 |
Product | pilus (MSHA type) biogenesis protein MshL |
Protein accession | YP_001182091 |
Protein GI | 146291667 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGCGA TCAAATACTT CACGCCTCTG CTCTCACTTT GTCTTGTGGC GTGCCAATCC ACAGATAGGC CACAACCTGA AGCCTCTAAG GCTGCACTGG CTGCATCAAT GCAAACGGCG AATCGTGCGA CGACGCCACC TCCCGCAACT ATGCCATATG CAGTGCAACG TGAACTAAAT TCGGGTGCTT TATTGGCAGG ACTCGCTCCG GCATTAGAAA CCGAGCGACG CTTTGATGTT TCGGCAAATG ATGTGGATGC GAGAGTGTTT TTTCCTAGCT TAGTGCAAGG TACGCCACTG AGCGTTGCCG TACATCCCGA GGTGGAGGGC ACGATTTCTC TATCACTAAA GGGCGTTACC TTAAGTGAAG CTATTCAAGT TGTTGAAGAT ATTTATGGCT ATGAAGTCAG TCGAGAAGGG CGAGTTTTAC GGGTATTCCC TGCGGGCATG CGTACAGAAA CGTTCCCCTT AAACTACCTC TATATGGAAC GTGATGGTCT GTCATTGACC TCTGTTAGCT CGGGTCGGAT TTCCGATAAT AATTCCAACA GTAATACTAA TAACAATAAC AATTCGAATA ACGGTAATTC CAACAATAAT AGCGGCAATA ACAATTCGAA CAACGGTAGT AATTCAAACA ATAATAGTGA TAGTTCAAAC GGCACTTTTA TCCGTTCGCG CACTAAAACA GATTTTTGGG GTGATTTAAA AGAAACCCTA ACGGCCATTA TTGGTGATAC GGGCAATGGG CGTCAGGTGG TTGTTACACC ACAGGCAGGG TTAGTCACTA TTCGAGCTTT CCCTAGCGAA TTACGCCAAG TACGCAGTTT TTTAAATTCG GCGGAAACCC ATTTGCAACG CCAAGTTATC CTTGAGGCAA AAATCCTAGA AGTCACACTA TCGGATGATT TTCAGCAAGG GATCCAATGG GAAAACGTGT TAGGTCATGT GGGAAATACC AATATTAATT TTGGTACAAC AGCGGGAACT GTGGGCAATA AAGTCACATC CACTCTGGGC GGTGTAACAT CACTTAGCAT TAAAGGCTCT GATTTCACAA CTATGATCAA TCTATTAGAT ACTCAGGGTG ATGTGGATGT GTTGTCTAGC CCAAGAGTGA CCGCATCGAA CAATCAAAAA GCGGTGATTA AGGTCGGCAC TGATGAGTAT TTTGTCACTG ATGTATCTTC AACCACAGTG GCAGGTACTA CGCCTGTGAC GACGCCACAG GTAGAGTTAA CGCCGTTCTT CTCGGGCATT GCCTTGGATG TTACACCGCA AATCGATAAA GATGGCAATG TGTTATTGCA TGTTCATCCA TCGGTTATTG ATGTGAAAGA GCAGACAAAA AATATCAAAG TGAGTAATGA ATCGCTGGAA TTACCCTTAG CACAGAGTGA GATCCGTGAA TCAGACACAG TGATCCGCGC CGCATCTGGC GATGTCGTCG TGATCGGTGG ATTGATGAAA AGCGAGAACG TAGAAGTTGT CTCACAGGTG CCGTTATTGG GTGATATTCC ATTATTAGGC GAGCTGTTTA AAAACCGTAG TAAGCAAAAG AAGAAAACCG AGCTGATTAT TCTGTTAAAA CCCACCGTTG TTGGCGGTGA TACGTGGAAG AATGAATTAG AGCGTTCAAA AACCTTATTA GATCGCTGGT ATCCGGAGAC TAAGTAA
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Protein sequence | MTAIKYFTPL LSLCLVACQS TDRPQPEASK AALAASMQTA NRATTPPPAT MPYAVQRELN SGALLAGLAP ALETERRFDV SANDVDARVF FPSLVQGTPL SVAVHPEVEG TISLSLKGVT LSEAIQVVED IYGYEVSREG RVLRVFPAGM RTETFPLNYL YMERDGLSLT SVSSGRISDN NSNSNTNNNN NSNNGNSNNN SGNNNSNNGS NSNNNSDSSN GTFIRSRTKT DFWGDLKETL TAIIGDTGNG RQVVVTPQAG LVTIRAFPSE LRQVRSFLNS AETHLQRQVI LEAKILEVTL SDDFQQGIQW ENVLGHVGNT NINFGTTAGT VGNKVTSTLG GVTSLSIKGS DFTTMINLLD TQGDVDVLSS PRVTASNNQK AVIKVGTDEY FVTDVSSTTV AGTTPVTTPQ VELTPFFSGI ALDVTPQIDK DGNVLLHVHP SVIDVKEQTK NIKVSNESLE LPLAQSEIRE SDTVIRAASG DVVVIGGLMK SENVEVVSQV PLLGDIPLLG ELFKNRSKQK KKTELIILLK PTVVGGDTWK NELERSKTLL DRWYPETK
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