| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0133 |
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| Symbol | |
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| ID | 5078959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 150238 |
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| End bp | 153471 |
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| Gene Length | 3234 bp |
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| Protein Length | 1077 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640497253 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001181668 |
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| Protein GI | 146291244 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCATCAA CGCTACATCA TCTCAGTTTG AAGCAAAAAC TGATTCTGTT TTCTTTGCTT
CCCCTATTGA TGATGGGCTT TTTCGTATTA ACCCGAATGT ACGTTCTGGC TAAAGAATAC
CGCGCCGCGG ATCATAGTCA TCTAGCAATA CAAACAACGG CACAAGTAAC TGATTTACTA
TATCAATTGC AAAACGAATA TAGTCTTAGC GTCAATGGCA GCCAAGCGGC AACACCATCC
GATGAAACGG AACTGCAGCA ACAGCAAACT AACACCAAGA AGGCTTTAAC TCATCTTCTC
ACTAGCACAT CATTCGCGAC CTTAATTGAT GCACTCACGG GTGCTCAACC AGCATCAGAG
CAATTACAAG CACAACGAGA CGCTATTGCA CTTTCAAGTC ATAACTTAGC ATCGGCTCGT
CAAGGTGTAT CAGATAAACA ACCACAAGCG TTGATTGAGC TCTATTTCCA ACTCAATAAG
CAATTATTGC AACTACTCCA ACTGTTACAG TTGCAAACTA ACGATATTAA TCAATCTCGT
GCTTACACTG ATTTATTGAA TCTGATCACT GTGCAGGAAT TGGCAGTAAA AGAGCGCAAT
GTGATCAATC AAATGCTGTT ATCAAAAGAA CTCAATATCA CTGATTACCG TACAATAAGT
ACTGTTATCT ATGAATACGG CCAAGCAATT TTACACGCCA GTAATGCATC CATATCAACC
AAACAGTCCC TTATTCATCA GGTTCAAACC TCTCCAGAAA GCCTGCAAAT CTTAAAAATC
AGCCAACAGA TTGAGCAACA GCTACGCATT AGTACCCTAG CGAAAACGAT CAATGCTCAT
TTAGGTTATG GTGGTTTAAT CGATAGCTTT CAAGATTACC GACTTACAGG TACAGATGCT
GCACAACAAA AATTTAATGC CACGCTATCC ATCATCCGAC TCAATTTAGC TGAATTGAAC
CATGAAATTC GTCATCTACC CGAATTAGCT ACCCCAGTAA ATGTGGTTGA AAACACAATA
GAACAATACG CATTTTATAT GGGTAAGTTG CACGAGCTTA AACAGCAGCA ACGCCCTCTT
GAAGATATCA ACGGGCTTTT GAATATCAAA AAGACACAGC TAAACGAAGC AATGGGTAAA
CTGTTAATGC CGCCTCATCC AGTCACAAGT CAACTCTGGT GGAAACTGAC AACGGATCGC
ATCAACAAAT TACACGCCAT CAGCAAAGAA ATGACTCAAT CTATGGCGCT ACAGAGTGAG
TACTTAAAAA CGAAAGCCTT GACCTTACTC GGACTTTATT TATTCTCGGC ATTTTTAACC
GCGACAATAA CGCTCTGGCT TGGCCGCAAA ATCATTAGCA ATTTTATGGA AAAAATAACC
AGAATTGCCA ATGGGATGCA GCAAATGGCG GCGGATCCCA CACTCAATAT TAATATCAAT
ATTTCAGGTT CAGATGAACT CGCCCGAATG GCCCGCGCCA TGAACCGCAT GATTAGCGAA
CGTCAAAAGG CAAGCCATGC GCTAAGCCGA GCCGCAGCCG TGTTTAATTA TTCCGCCGAA
GGCATAGTGG TCACAGATGC TGAAAACCAT ATTGAACTGA TTAATCCCGC CTTCACCCAG
ATAACGGGTT ATACCTTAAA TGAAATTAAA GGCCACAACC CATCAATACT AAGCGCTAAA
CGCCATCAGC CACATTTTTA TACCGCTATG TGGCAATCGC TTCAAAAAGA AGGGAAATGG
GAAGGTGAAA TCTGGAATAA GCGTAAAGAT GGAGAGGTGT ATCCCGAGTA TCTTGCCATC
ACAGTTGTCA AGAATGAACA AGGAGAGATC ATCCAGCATA TTGGTTTATT TATGGATATC
AGCAAGCGTA AGCAATATGA GCAGGACCTC TGGTATCAAG CCAACTTTGA TAGCTTAACA
GGCCTACCCA ATCGCAAACT GTTTAACGAA CGACTACAGC ACGAAATCCA ACTGGCTCAA
CACGATTCAC GCAAACTGGC CATCCTACTA ATTGACTTAG ATCAGTTCAA ATACATCAAC
GATGTGCAGG GTCATGCCAC GGGGGATTTG CTGCTTCAGG ATGTCGCCAA ACGCTTAGAA
AGCATCGGTG GCCAAAACGA TTTTATTGCG CGGATCGGTG GTGATGAGTT TGTGCTTATT
CTGCCACGCC TCACTAATGA ACTTGCCATT GAGCATATGG CTACGCGCAT TATCGAAACC
TTAGCCACGC CTTTTAGTCT GAACGAGCGA GAGATCCAAA TCTCCGCCAG CTTTGGTATT
GGGGTCTACC CAGAGGATGG CCTTGATGTG AGCTCCCTCA CCCGCAATAC CGAAATGGCA
ATGTATCAAG CCAAAGACGC AGGGCGAAAT AACTTTAAAT ATTTTACCTC GGGAATGAAC
CAAGCCATGT TTGCCCGCAT GGAACTGGAA CAACGCCTTC GCCGCGCAGT GGCACAAAAT
GAGTTTGCCT TGCATTATCA ACCTATTGTG GATATGAAAA CAGGCCAAGT CTGCAGTGTT
GAGGCACTTA TCCGTTGGCA AGATCCCGAT TTGGGATTAA TACCGCCAGA TCATTTTATC
GGGATTGCCG AAGAAACAGG ACTCATTGAA CCTATGGGGG AATGGGTGCT CAATCAAGCC
ATGAGTGATC TTAGGCAATG GCAGAAAAGC GGCTTAAATA TCAATGTTGC TATCAATGTT
TCTGGCCGGC AATGCATCAA TACGCGCGGA ATGAGCTTTG ATCAGGTGCT GCAAGAATGC
TTCAATCGCC ACCATATTAA TCCGAGAAAT GTTCATATTG AGATCACTGA AAGTATGCTG
ATGGGCGATG CCAGCCACTG CCTCAGTACC CTCAATGCTA TTCGTCAGCT AGGCTCACAG
ATTTATATCG ATGATTTTGG TACAGGCTAT TCATCCCTCA GTTATTTGAA GAAATATCCT
ATTTCTGTCA TAAAAATTGA CCGCAGTTTT GTAGAACATG CCCTCGAAAG CACTTCAAAT
GCCAACTTAG TCAAAGCGAT TGTGATGATG GGCCAAAGTC TTGAAATGAA ACTCGTCGCC
GAAGGGATAG AAACCCCAGC ACAATGGAAT TTCCTAAAAG ACTTAGGCTG CGATTTCGCC
CAAGGCTATT TAATTTCTAA GCCACTGCCT TTCGATGACG TCACACCATT ACTCAAACAA
AAGTACCAGA TACGACTCGA TTCCGATGGT GAAGCTGAAT GCAGTAATTT CTAA
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| Protein sequence | MPSTLHHLSL KQKLILFSLL PLLMMGFFVL TRMYVLAKEY RAADHSHLAI QTTAQVTDLL
YQLQNEYSLS VNGSQAATPS DETELQQQQT NTKKALTHLL TSTSFATLID ALTGAQPASE
QLQAQRDAIA LSSHNLASAR QGVSDKQPQA LIELYFQLNK QLLQLLQLLQ LQTNDINQSR
AYTDLLNLIT VQELAVKERN VINQMLLSKE LNITDYRTIS TVIYEYGQAI LHASNASIST
KQSLIHQVQT SPESLQILKI SQQIEQQLRI STLAKTINAH LGYGGLIDSF QDYRLTGTDA
AQQKFNATLS IIRLNLAELN HEIRHLPELA TPVNVVENTI EQYAFYMGKL HELKQQQRPL
EDINGLLNIK KTQLNEAMGK LLMPPHPVTS QLWWKLTTDR INKLHAISKE MTQSMALQSE
YLKTKALTLL GLYLFSAFLT ATITLWLGRK IISNFMEKIT RIANGMQQMA ADPTLNININ
ISGSDELARM ARAMNRMISE RQKASHALSR AAAVFNYSAE GIVVTDAENH IELINPAFTQ
ITGYTLNEIK GHNPSILSAK RHQPHFYTAM WQSLQKEGKW EGEIWNKRKD GEVYPEYLAI
TVVKNEQGEI IQHIGLFMDI SKRKQYEQDL WYQANFDSLT GLPNRKLFNE RLQHEIQLAQ
HDSRKLAILL IDLDQFKYIN DVQGHATGDL LLQDVAKRLE SIGGQNDFIA RIGGDEFVLI
LPRLTNELAI EHMATRIIET LATPFSLNER EIQISASFGI GVYPEDGLDV SSLTRNTEMA
MYQAKDAGRN NFKYFTSGMN QAMFARMELE QRLRRAVAQN EFALHYQPIV DMKTGQVCSV
EALIRWQDPD LGLIPPDHFI GIAEETGLIE PMGEWVLNQA MSDLRQWQKS GLNINVAINV
SGRQCINTRG MSFDQVLQEC FNRHHINPRN VHIEITESML MGDASHCLST LNAIRQLGSQ
IYIDDFGTGY SSLSYLKKYP ISVIKIDRSF VEHALESTSN ANLVKAIVMM GQSLEMKLVA
EGIETPAQWN FLKDLGCDFA QGYLISKPLP FDDVTPLLKQ KYQIRLDSDG EAECSNF
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