Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_0025 |
Symbol | |
ID | 5081500 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 30700 |
End bp | 31824 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640497141 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001181560 |
Protein GI | 146291136 |
COG category | [S] Function unknown |
COG ID | [COG1652] Uncharacterized protein containing LysM domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACCACA CCATGAAACG GTTAATTTTA CTCGTGTTAA TGACATTTAG TTGCACGTTT GTTTCCGCTG ATACTCTTAC GCTTAAAGCG GGGTATCCCG AGTCATATGT GGTGAAAAAA GGTGATACCT TATGGGATAT CGCTACGACT TTCTTAAATG ATCCGTGGAA ATGGCCTCGT CTTTGGGATG TTAACCCACA GATTGCGAAC CCTCATCTTA TTTATCCCGG TGATCAACTG ACATTAATCT TTATTGATGG TCAACCTCGG CTTGTACGTG ATAGTTCGAG TGCGGGAAAA CCTTTTGTAA AAAAGAGCCC TGAAGGGCGC ATTATTGCTA AGAGTGATGC TGTTCCTGCC ATCGATCTTG CACTTATCAA AAACTATCTT GTGCAAAATC GAGTTGTCGA TTCTAACTGG TTTTCTGAGC AGCCAATGAT ATTGGCGGGT GAAAGTCCTT CACGTCACCA TATTATTGGT GACGTGGTTT ATATCAATAA CATATTACCT TTACACCAAA AGTATGGTGT TTACGAAAGT GGTCGAGCAT TTTTTAATAA AGAGTCCGGT GAGGCGTTGG GGCAAGAGGC TATCTTGGTA TCTACTGGTC AAGTTATTGA GTCTGGAAAT GTTTCAAAGA TAAAATTACT GAGTAGTTTT CGAGAGACTA AAGCGGGTTT TAAGGTGCTA CCAATGGAGG ATGACTCCCT GATGTCTGCG TACTTTACCC CCAAGCCTGC ACAGTTAGTA AACCATGCTT CAGTTTTAGC AACAGAATCT GCAATGCGTG AAGCGGGTAA GCTGAATGTA GTCTATTTAG ATAAAGGAAC CCAAGACGGT GTTGAGCCTG GTAATGTGTT CTCAATTTAC CGTGATGGTG AAGAAATTGT CATTAACCAT GATGGTTCAC CGGTTCCTGC GCTAGAACGC ACCGCCTATG ATAACATCAT AGCGTCCGTT TCATCGGAGC GTTCGATTAA AATGCCGGAC GTTTATCATG GTAAACTAAT GGTATTTAAA GTATTCGATA AAGTGAGTCT GGGTTTAATT GTCTCTACAG AACGCCCAGT TCGAGTTGAT GATAAGCTAA TTTCGCCCGA TTATTTAGCG TTTAGAGGTC AATAA
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Protein sequence | MDHTMKRLIL LVLMTFSCTF VSADTLTLKA GYPESYVVKK GDTLWDIATT FLNDPWKWPR LWDVNPQIAN PHLIYPGDQL TLIFIDGQPR LVRDSSSAGK PFVKKSPEGR IIAKSDAVPA IDLALIKNYL VQNRVVDSNW FSEQPMILAG ESPSRHHIIG DVVYINNILP LHQKYGVYES GRAFFNKESG EALGQEAILV STGQVIESGN VSKIKLLSSF RETKAGFKVL PMEDDSLMSA YFTPKPAQLV NHASVLATES AMREAGKLNV VYLDKGTQDG VEPGNVFSIY RDGEEIVINH DGSPVPALER TAYDNIIASV SSERSIKMPD VYHGKLMVFK VFDKVSLGLI VSTERPVRVD DKLISPDYLA FRGQ
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