Gene Spro_4506 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpro_4506 
SymbolaroE 
ID5605842 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSerratia proteamaculans 568 
KingdomBacteria 
Replicon accessionNC_009832 
Strand
Start bp5000107 
End bp5000925 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content55% 
IMG OID640940073 
Productshikimate 5-dehydrogenase 
Protein accessionYP_001480728 
Protein GI157372739 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0169] Shikimate 5-dehydrogenase 
TIGRFAM ID[TIGR00507] shikimate 5-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000408747 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000607991 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAGAAGT TTGCAGTATT CGGTAATCCT ATCGGCCACA GCAAGTCACC GCGTATTCAT 
GCGCTATTTG CCGCGCAAAC AGGGATAGAA CATCCTTATG GCACTGTGCT GGCGCCACTG
GATGGTTTCG AAACCACTTT GCAGACGTTT ATTCAGGCGG GTGGCAAGGG AGCGAACGTC
ACGGTGCCTT TTAAAGAAAA TGCTTATGAA GCGGCGACCG AACTGAGTCA ACGAGCCTCG
CTGGCCGGTG CGGTAAATAC CTTGAAGATA CTGCCAGACG GTGGGTTACT GGGTGACAAC
ACTGATGGGA TCGGCCTGCT GACCGATCTT GAACGTCAGG GGTTGATCCA ACCCAAGGAT
CGTATCTTGT TGGTGGGGGC TGGTGGCGCG GCACGTGGCG CGATCTTGCC GCTACTGTCT
TTTGGTTGTG AAGTGGTGAT CACCAACCGT ACTTTTAGCC GTGCGCAGAC ATTGGCGCAG
GTATTCCAGC ATCTGGGCGA AATATCCGCG TTACCCCTGG ATCAACTTGA TCAACAGCGG
TTTGATTTAG TGATTAACGC TACGGCATCC GGTATCAGCG GTGACATCCC GGCGCTACCG
GTTGGTACGG TCAATGGCCA TACGCGTTGT TATGACATGT TTTATCAGCA GGGATTAACT
CCCTTTCTGG CCTGGGCGCA GCAACAGGGT GCCACAGAAT ATGCCGACGG TTTAGGGATG
CTGGTGGGGC AGGCCGCGCA TGCGTTCCTG CTGTGGCATG GTGTGATGCC GGAGATCGAA
CCGGTATTGC GCCAGCTGCG TCACGAACTG GCAGTGTAA
 
Protein sequence
MEKFAVFGNP IGHSKSPRIH ALFAAQTGIE HPYGTVLAPL DGFETTLQTF IQAGGKGANV 
TVPFKENAYE AATELSQRAS LAGAVNTLKI LPDGGLLGDN TDGIGLLTDL ERQGLIQPKD
RILLVGAGGA ARGAILPLLS FGCEVVITNR TFSRAQTLAQ VFQHLGEISA LPLDQLDQQR
FDLVINATAS GISGDIPALP VGTVNGHTRC YDMFYQQGLT PFLAWAQQQG ATEYADGLGM
LVGQAAHAFL LWHGVMPEIE PVLRQLRHEL AV