Gene Spro_4022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpro_4022 
Symbol 
ID5603206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSerratia proteamaculans 568 
KingdomBacteria 
Replicon accessionNC_009832 
Strand- 
Start bp4464387 
End bp4466033 
Gene Length1647 bp 
Protein Length548 aa 
Translation table11 
GC content56% 
IMG OID640939582 
Producttartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit 
Protein accessionYP_001480245 
Protein GI157372256 
COG category[C] Energy production and conversion 
COG ID[COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain 
TIGRFAM ID[TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.00935684 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones6 
Fosmid unclonability p-value0.00184616 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGAATA AACCGTTCCA TTATCAAGAT CCGTTCCCAC TGAAGAAAGA CGATACTGAA 
TACTATCTGT TGAGCCGTGA CCACGTTTCC GTGAGTGAGT TTGAAGGCCA GGAAGTGCTG 
AAAGTAGCCC CCGAAGCGTT AACCCTCCTT GCTCAACATG CATTCCATGA CGCCTCATTC 
ATGCTGCGCC CGGCGCATCA GCAGCAGGTG GCCGATATCC TTAAGGATCC GGACGCCAGC 
GAAAACGACA AGTACGTTGC GCTGCAATTT TTACGTAACT CAGAAATCGC CGCCAAGGGT 
ATTTTACCGA CCTGTCAGGA TACCGGTACC GCCATCATCG TCGGCAAAAA AGGCCAGCGC 
GTCTGGACCG GCGGCGGTGA CGAAGCGGCA TTGTCGCGTG GGGTGTACAA CACCTTTATC 
GAAGACAACC TGCGCTACTC GCAAAACGCC GCGCTGGATA TGTACAACGA GGTCAACACC 
GGCAGCAACC TGCCGGCGCA GATCGACCTC TACAGCGTTG ACGGTGAAGA ATACAAGTTC 
CTGTGCATCG CCAAGGGCGG TGGTTCAGCC AATAAAACCT ATCTTTACCA GGAAACCAAG 
GCGCTGCTGT CCCCGGGCAA GCTGAAGGAT TATCTGGTCG AGAAAATGCG TACGTTGGGT 
ACCGCGGCCT GCCCGCCTTA CCACGTGGCA TTCGTTATCG GTGGTACCTC GGCCGAAGCG 
ACGTTGAAAA CCGTCAAGCT GGCCTCGACC AAGTACTATG ACGGCCTGCC GACCGAAGGC 
AATGAGCACG GTCAGGCATT CCGCGACGTA GCGCTGGAAG AAGAGTTACT CAAAGAAGCG 
CAGAATTTGG GGTTGGGCGC GCAGTTTGGC GGCAAATACT TTGCGCACGA CATTCGCGTG 
GTGCGTCTGC CGCGCCATGG TGCTTCCTGT CCGGTAGGCA TGGGCGTTTC CTGCTCCGCT 
GACCGTAACA TCAAGGGCAA GATTAACCGT GACGGCATCT GGCTGGAGAA GCTGGAGCAC 
AATCCGGGCA AGTTTATTCC GCAAGAACTG CGTCAGGCGG GGGAAGGCGA AGCCGTCAAG 
ATTGACCTCA ACCGCCCAAT GGCCGATATC CTCAAGCAGC TGTCGCAATT CCCGGTGTCT 
ACCCGTTTGT CGCTGAGTGG CACCATCATC GTGGGGCGCG ACATTGCCCA CGCCAAGCTG 
AAAGAGCGGC TGGACAACGG CGAAGGTCTG CCGCAGTACG TTAAGGATCA TCCGATTTAC 
TACGCCGGCC CGGCCAAAAC GCCGGACGGT TACGCTTCAG GTTCTCTGGG GCCAACCACC 
GCCGGGCGTA TGGACTCTTA CGTTGACCTG CTGCAGTCCC ACGGCGGCAG TATGATCATG 
CTGGCGAAAG GCAACCGCAG CCAGCAAGTG ACCGACGCCT GCCACAAACA CGGCGGTTTT 
TACCTCGGCA GTATTGGTGG CCCGGCGGCG GTGCTGGCGC AACAAAGCAT TAAAAGCCTG 
ACCTGCGTCG AATACCCTGA ACTGGGGATG GAAGCTATTT GGAAAATCGA AGTGGAAGAT 
TTCCCGGCGT TCATTCTGGT GGATGATAAA GGCAATGACT TCTTCCAGAA GATCCAGGCC 
GGTCAGTGTT CACGCTGTGT GAAATAA
 
Protein sequence
MSNKPFHYQD PFPLKKDDTE YYLLSRDHVS VSEFEGQEVL KVAPEALTLL AQHAFHDASF 
MLRPAHQQQV ADILKDPDAS ENDKYVALQF LRNSEIAAKG ILPTCQDTGT AIIVGKKGQR 
VWTGGGDEAA LSRGVYNTFI EDNLRYSQNA ALDMYNEVNT GSNLPAQIDL YSVDGEEYKF 
LCIAKGGGSA NKTYLYQETK ALLSPGKLKD YLVEKMRTLG TAACPPYHVA FVIGGTSAEA 
TLKTVKLAST KYYDGLPTEG NEHGQAFRDV ALEEELLKEA QNLGLGAQFG GKYFAHDIRV 
VRLPRHGASC PVGMGVSCSA DRNIKGKINR DGIWLEKLEH NPGKFIPQEL RQAGEGEAVK 
IDLNRPMADI LKQLSQFPVS TRLSLSGTII VGRDIAHAKL KERLDNGEGL PQYVKDHPIY 
YAGPAKTPDG YASGSLGPTT AGRMDSYVDL LQSHGGSMIM LAKGNRSQQV TDACHKHGGF 
YLGSIGGPAA VLAQQSIKSL TCVEYPELGM EAIWKIEVED FPAFILVDDK GNDFFQKIQA 
GQCSRCVK