Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spro_3444 |
Symbol | ligA |
ID | 5604610 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Serratia proteamaculans 568 |
Kingdom | Bacteria |
Replicon accession | NC_009832 |
Strand | - |
Start bp | 3813527 |
End bp | 3815548 |
Gene Length | 2022 bp |
Protein Length | 673 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640938997 |
Product | NAD-dependent DNA ligase LigA |
Protein accession | YP_001479670 |
Protein GI | 157371681 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000441921 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000209829 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAATCGA TAATCCAACA AATCAATCAA CTACGAACCT CACTGCGCCA TCACGAATAT CAATACCATG TGCTGGACGC GCCGGAAGTA CCGGATGCGG AATACGACCG CCTGATGGGT GAACTGCGTG CCCTGGAAAG CGCACATCCG GAGCTGATCA CCGCCGATTC TCCGACCCAG CGCGTGGGTG CCGCCCCGCT GGCGGCGTTC GATCAGGTGC GTCATGAAGT GCCTATGTTG TCACTGGACA ACGTTTTCGA CGAAGAAAGC TTCCTGGCAT TCTACAAACG AGTGCAGGAT CGCCTGAAGA GCAGCGATCC GCTGACCTTC TGCTGTGAGC TGAAGCTGGA CGGTCTGGCG GTCAGCCTGC TGTACGAAGA TGGCGAACTG GTTCGCGCGG CTACCCGTGG CGACGGCACC ACCGGTGAAA ACATTACCTC TAACGTGCGC ACCATCCGCG CCATTCCACT GCGATTGACA GGTGACAATA TCCCGCGCCG GCTGGAAGTG CGTGGCGAAG TGTTTATGCC GCAGGCCGGT TTCGAGCAGA TGAACGAAGA GGCGCGTCGC AAGGACGGCA AGATCTTCGC CAATCCGCGT AACGCTGCCG CCGGTTCGAT TCGTCAGCTC GACCCGCGTA TTACCGCCAA ACGCCCACTG ACCTTTTTCT GTTATGGCGT TGGCCTGCTG GAAGGCGGCG AATTGCCTCG CAGCCACTGG CAGCGCCTGA TGCAGTTCAA AGACTGGGGG TTACCGGTCA GCGATCGCGC CAAACGTTGT ACCGGCAGCG ACGAAGTGCT GGCGTTCTAC CGCCAGGTGG AGCAGGACCG CACGCAACTT GGGTTTGATA TCGACGGCGT GGTAGTGAAA ATCGACGATA TTGACCTGCA GGAAACGCTG GGCTTTGTGG CGCGTGCGCC GCGCTGGGCG ACGGCATTCA AATTCCCGGC GCAGGAGCAG ATTACCCAGG TGCGCGAGGT GGAATTCCAG GTTGGCCGTA CCGGTGCGAT CACGCCGGTG GCAAGACTGG AGCCCGTGCT GGTTGCCGGG GTGATCGTCA GCAACGCCAC GCTGCATAAC GCCGATGAAA TTGAACGTTT GGGCCTGCGC ATCGGCGATA CGGTGATTGT GCGCCGTGCC GGCGACGTGA TCCCGCAGGT GGTGGGAGTG ATAGCCGAAC GTCGTCCAGC GGACGCGCGT GAAATTTTGT TCCCGCAGCA TTGTCCGGTA TGCGGTTCCG ACGTTGAGAG AGTGGAAGGC GAAGCGGTGG CACGTTGCAC CGGCGGGCTG ATCTGCGCTG CACAACGCAA AGAAGCGCTG AAGCACTTTG TTTCCCGTCG GGCGTTGGAC GTCGACGGCA TGGGCGACAA AATCATCGAG CAGTTGGTGG AAAAAGAGTA TGTGAAGAAT CCGGCCGATC TGTTCCGTCT GTCCGCCGGC ATTCTGACCG GGCTGGATCG CATGGGGCCG AAATCGGCGC AGAATCTGGT CAACGCGCTG GAAAAATCCA AGCAGACCAC CTTTGCCCGT TTCCTGTATG CGCTTGGCAT CCGTGAAGTC GGCGAAGCCA CAGCGGCCAA TCTGGCTGCA CACTTCGGTA CGCTGGATAA ACTGTTAGCC GCTGATATCG AGGCGTTGAA AGAAGTGCCC GAGGTCGGTG AAATCGTGGC GAAGCACACG CGTCATTTCC TTGACGAAGA GCTCAACCAA CAGGTTATCC AGGAACTGGT TAGTGACGAA ATCGGCATTA ACTGGCCGGC CCCGGTGGTG ATAGTAGCGG AAGAGATCGA CAGCCCGTTT GCCGGCAAAA CCGTGGTGCT GACCGGCTCG TTGAGCCAGC TATCACGTGA CGAGGCCAAA GATCGTCTGA CGGCGCTGGG CGCCAAGGTC AGTGGCAGCG TATCGAAGAA AACCGATCTG GTGATTGCAG GTGAAGCCGC CGGTTCCAAA CTGGTGAAGG CGCAGGAACT GGGCATTGAG GTCATTGACG AAGCGGAAAT GATCCGCCTG CTGGGGGCCT GA
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Protein sequence | MESIIQQINQ LRTSLRHHEY QYHVLDAPEV PDAEYDRLMG ELRALESAHP ELITADSPTQ RVGAAPLAAF DQVRHEVPML SLDNVFDEES FLAFYKRVQD RLKSSDPLTF CCELKLDGLA VSLLYEDGEL VRAATRGDGT TGENITSNVR TIRAIPLRLT GDNIPRRLEV RGEVFMPQAG FEQMNEEARR KDGKIFANPR NAAAGSIRQL DPRITAKRPL TFFCYGVGLL EGGELPRSHW QRLMQFKDWG LPVSDRAKRC TGSDEVLAFY RQVEQDRTQL GFDIDGVVVK IDDIDLQETL GFVARAPRWA TAFKFPAQEQ ITQVREVEFQ VGRTGAITPV ARLEPVLVAG VIVSNATLHN ADEIERLGLR IGDTVIVRRA GDVIPQVVGV IAERRPADAR EILFPQHCPV CGSDVERVEG EAVARCTGGL ICAAQRKEAL KHFVSRRALD VDGMGDKIIE QLVEKEYVKN PADLFRLSAG ILTGLDRMGP KSAQNLVNAL EKSKQTTFAR FLYALGIREV GEATAANLAA HFGTLDKLLA ADIEALKEVP EVGEIVAKHT RHFLDEELNQ QVIQELVSDE IGINWPAPVV IVAEEIDSPF AGKTVVLTGS LSQLSRDEAK DRLTALGAKV SGSVSKKTDL VIAGEAAGSK LVKAQELGIE VIDEAEMIRL LGA
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