Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spro_3079 |
Symbol | |
ID | 5604351 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Serratia proteamaculans 568 |
Kingdom | Bacteria |
Replicon accession | NC_009832 |
Strand | + |
Start bp | 3388195 |
End bp | 3389715 |
Gene Length | 1521 bp |
Protein Length | 506 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640938620 |
Product | 3-hydroxy-acyl-CoA dehydrogenase |
Protein accession | YP_001479308 |
Protein GI | 157371319 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
TIGRFAM ID | [TIGR02279] 3-hydroxyacyl-CoA dehydrogenase PaaC |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0640912 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACCAGC CGAACTTAAA CCTCAGGGTG GCGGTGATTG GTGCCGGTAC CATGGGTATC GGTATTGCTC AGGTGGCCGC CGCCGCCGGG CATCAGGTGC AGCTGTTTGA TATTGCCGCC TCTGCTGCCC GGCAGGCACT CGGCGCTCTC GCCCAACGGC TGCGTCAGCG TGTTGCGGCC GGCAAGGCCG ATGCCACCAC CACCGAAGCC CTGCTGGCGC GCATTCAGCC GGCAGAGTCG CTTAACTCGC TGGCCGACAG CGGTCTGGTG ATAGAAGCGG TGGCGGAAAA GCTGGCAATC AAACAAAGCC TGTTCCGTGA GCTGGAAGCC CTGTGCTCAC CCGCCACGCT GTTTGCCAGC AACACCTCCT CGCTGTCGAT TACCGCCATC GCCGGTGCGC TGCAACATCC ACAGCGTCTG GCCGGGCTGC ACTTCTTCAA CCCGGCACCG CTGATGAAGC TGGTGGAGAT CGTCAGCGGG CTGGACACCA GCACCGAAAC CGTCGCCACA CTGCAAAGAC TAACCCGGCA ATGGGGCAAA CAAAGCGTGC TGTGCCGCTC CACGCCGGGG TTCATCGTTA ACCGGGTGGC GCGACCGTTT TATGCCGAGG CCCTGCGCGC GCTGGAAGAA CAGGTCGCTG ACGCCGCCAC GCTGGATGCG GTGATACGCG ACGCGGGTGG CTTCGTCATG GGGCCACTGC AACTGACCGA TATGATTGGT CAGGATATCA ATTATGCCGT GACCGAATCG GTGTTTCAGG CTTTCTTCCA GGATCCCCGG TTTACCCCGT CGCTGGTACA GCAGGAACTG GTGGCGGCCG GGCGTCTTGG CCGCAAAAGT GGCCGTGGTT TTTATCGCTA TGGCGATCAT CAGCCGCCGG TCGCTGCCGT TCTGCCTGCC TCTACGGCAG CATTGCCGCG CAGCATCACA CTGCATGGCG ATGCCGCCGG TATCGCGCTA CTGAGCAAAT TACTGAGCGG AAATGCGCAG TCGATCAAAC AATCTGGCCA GACCAGCGCC TACGCCCGGA TCGATGAAGT TACACTTATG TTAACTAATG GTAAAACAGC CAGCCAGGTG GCCGATGAAA CCGCAACTCC GGTGGTGCTG TTTGATCTGT CTGCCGACTA CTCGCAGGCC ACCACCGTCG CTATCAGCTG CGCGGCGCAA AACGATGACC GGCACAACGC CACCATCATG CGTCTGCTGC AATCTCTCGG CAAGAAGGTG ATCGCTTTGC CGGACTATCC CGGCCTGCTG GTGATGCGCA CCCTCGCCAT GTTGGCCAAT GAGGCGCTCG ACGTGGTGAA CAAAGGCGTC GCCAGTGCCG AGGATACCGA CCACGCCATG CGCTACGGCG TCAATTACCC ACGCGGCCCG CTGGAATGGG GGACGGCTCT GGGTTGGCGA CACATCCTCA CCACGCTGGA AAACCTGCAA CTCTACTACG GTGAGCCACG TTATCGCCCA ATGCCGCTGC TGCGTCATTA CGCATCCCTC TCTTCAGGAG CCCAACCATG A
|
Protein sequence | MNQPNLNLRV AVIGAGTMGI GIAQVAAAAG HQVQLFDIAA SAARQALGAL AQRLRQRVAA GKADATTTEA LLARIQPAES LNSLADSGLV IEAVAEKLAI KQSLFRELEA LCSPATLFAS NTSSLSITAI AGALQHPQRL AGLHFFNPAP LMKLVEIVSG LDTSTETVAT LQRLTRQWGK QSVLCRSTPG FIVNRVARPF YAEALRALEE QVADAATLDA VIRDAGGFVM GPLQLTDMIG QDINYAVTES VFQAFFQDPR FTPSLVQQEL VAAGRLGRKS GRGFYRYGDH QPPVAAVLPA STAALPRSIT LHGDAAGIAL LSKLLSGNAQ SIKQSGQTSA YARIDEVTLM LTNGKTASQV ADETATPVVL FDLSADYSQA TTVAISCAAQ NDDRHNATIM RLLQSLGKKV IALPDYPGLL VMRTLAMLAN EALDVVNKGV ASAEDTDHAM RYGVNYPRGP LEWGTALGWR HILTTLENLQ LYYGEPRYRP MPLLRHYASL SSGAQP
|
| |