| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_1929 |
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| Symbol | |
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| ID | 5606678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Serratia proteamaculans 568 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009832 |
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| Strand | - |
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| Start bp | 2110480 |
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| End bp | 2113626 |
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| Gene Length | 3147 bp |
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| Protein Length | 1048 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640937465 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001478160 |
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| Protein GI | 157370171 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.26926 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00468273 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACTTTT CCCGTTTTTT CATCGACCGG CCGATATTTG CCGCGGTACT GTCGATTCTG
ATTTTTGTCG GCGGTGTTAT TGCCATCCCG CTGCTGCCGA TCAGCGAATA TCCGGACGTG
GTGCCGCCCA GCGTGCAGGT ACGTGCTCAA TACCCCGGCG CTAACCCGAA AGAGATCGCC
GAAACGGTGG CAACGCCGCT GGAAGAGGCG ATCAACGGCG TCGAAAACAT GATGTACATG
AAGTCGGTGG CCGGTTCTGA CGGCGTGCTG GTCACCACCG TCACCTTCCG CCCAGGAACA
GACCCCGATC AGGCACAGGT GCAGGTACAA AACCGCGTGG CGCAGGCCGA AGCACGCTTG
CCTGAGGATG TGCGGCGGCA AGGGGTGACG ACCCAGAAGC AATCCCCGGC CCTGACGCTG
GTGGTCCATC TGGTCTCCCC TTCCGGTAAA TACGATTCGC TCTACCTGCG CAACTACGCC
ACTTTGAAGG TCAAGGATGA GCTGGCTCGC CTACCCGGTA TCGGCCAGGT ACAGATTTTC
GGTGCCGGTG AGTACGCCAT GCGTATTTGG CTCGATCCGA ATAAGGTTGC CTCACGTGGG
CTGACCGCCT CTGATGTGGT CTCTGCCATG CAGGAGCAGA ACGTACAGGT TTCTGCCGGG
CAACTGGGCG CAGAACCGAT GCCAACCCGC AGCGATTATC TGCTGTCGAT CAACGCGCAG
GGCCGTCTGC AGACCGAGGA AGAGTTCGGC AATATTATCC TCAAGAGCGG CGACAACGGC
GAAGTCGTTC GCCTGCGCGA CGTCGCACGC ATTGAAATGG GCTCCGGCAG CTACGCGCTG
CGTGCCCAGC TCAATAATAA GGACGCGGTG GGGATTGGTA TCTTCCAGGC TCCGGGGGCC
AATGCTATCG AGCTGTCCAA CGCGGTGCGG GCCAAAATGG CCGAGCTGTC GACCCGCTTT
CCGGACGGCA TGAGCTGGCA AGCCCCGTAC GACCCGACGG TATTCGTGCG CGATTCGATC
AGCTCGGTGG TGGATACCCT GCTCGAAGCG GTGCTGCTGG TGGTTCTGGT GGTGATCCTG
TTTCTGCAAA CCTGGCGTGC GTCGATCATT CCACTGCTGG CGGTCCCCAT CTCCATCGTC
GGTACCTTTG CGGCGCTCTA TTTGTTGGGC TTTTCGCTCA ACACCCTGAG CCTGTTCGGA
CTGGTGCTGG CCATAGGTAT CGTGGTCGAT GATGCCATTG TGGTGGTGGA AAACGTCGAG
CGTAATATCG AGGAAGGTCT GTCACCGCTG GCGGCGGCGC ACCAGGCAAT GCGTGAAGTA
TCCGGCCCGA TTATCGCCAT CGCCGTCGTG CTGTGCGCAG TGTTCGTGCC GATGGCGTTT
CTGTCCGGCG TCACCGGCCA GTTTTATAAG CAGTTCGCCG TAACTATCGC CATTTCGACC
GTGATCTCGG CAATCAACTC GCTGACCCTG TCACCGGCGT TGGCGGCGCT GCTGCTGAAG
CCGCATGGCG CACCTAAAGA CATGCCATCA CGCCTGATTG ATCGCTTGTT TGGTTGGCTG
TTCCGTCCGT TTAACCGCTT CTTTGCCAGC AGCTCACAAC GTTATCAACG TGGGGTTTCC
CGGGCGCTGG GCAAACGCGG CGCGGTATTT GTGGTGTATG TGCTGTTGCT GTGCGCCGCC
GGGGTGATGT TTAAAACCGT GCCCGGTGGC TTCATTCCGA CTCAGGACAA GCTTTATTTG
ATTGGCGGCG TGAAAATGCC GGAGGGCGCG TCGCTGGAAC GTACCGACGC GGTGATCCGC
AAGATGAGCG CCATCGGCCT GAGCGTCGAC GGGGTGACGG ATGCGGTTTC CTTCCCCGGG
CTGAATGCAT TGCAATTTAC CAATACGCCC AACACCGGTA CCGTGTTCTT TGCGCTGGAG
TCATTAAGCA CCCGCACCCG AAGTGCGGCG CAAATTAATG CCGAGATTAA CGCCAAAATC
TCGCAGATCC AGGAAGGGTT TGCGTTCTCG ATTATGCCGC CACCGATCCT CGGTATCGGC
CAGGGTTCCG GTTATTCCCT GTATATTCAG GACCGTGCCG GTCTGGGCTA TGGCGCGTTG
CAAACTGCAA TCAACACCAT GTCGGGCGCT ATCATGCAAA CTCCGGGTAT GGGTTTCCCA
ATCTCGTCTT ATCAGGCCAA CGTACCGCAG CTGGACGCGA AAATTGACCG CGACAAGGCC
AAGGCGCAAG GGGTACCGCT CAATGCCCTG TTCAGCACCT TGCAGACCTA TCTCGGTTCG
TCTTATATCA ATGACTTCAA CCGCTATGGC CGCACCTGGA AGGTGATGGC GCAGGCCGAC
GGTCAATTCC GCGACAGCGT GGAGGACATC GCCAACCTGC GCACCCGTAA CGATAAGGGG
GAAATGGTAC CGATTGGCAG CATGGTCAGC ATCAGCACCA CCTACGGCCC GGATCCGGTG
ATCCGTTACA ACGGTTTCCC GGCGGCAGAT CTGATTGGTG ATGCCGATCC GCGTGTGCTG
TCATCGTCAC AGGCCATGAG TGAACTGACG GTGATGGCCA GCAAGCTGTT GCCGAACGGC
ATGAACATTC AGTGGACCGA TCTGAGCTAT CAGCAGTCCA CCCAGGGCAA TGCGGCCATT
ATTGTCTTCC CGGTGGCGGT GCTGCTGGCC TTCCTGGCGC TGGCAGCCTT GTACGAAAGC
TGGACGCTGC CATTGGCGGT GATCCTGATC GTGCCGATGA CCATGCTGTC GGCACTGTTC
GGGGTCTGGC TGACCGGCGG TGACAACAAC GTGTTCGTGC AGGTGGGGCT GGTGGTATTG
ATGGGCCTGG CCTGTAAGAA CGCCATTTTG ATCGTCGAGT TCGCCCGTGA ACTGGAGCTA
CAGGGCAAAA GCATTATGGA AGCGGCACTG GAAGCCTGTC GTCTGCGACT GCGGCCGATT
GTAATGACCT CCATCGCCTT TATCGCCGGG ACTATTCCGT TGATCCTCGG GCACGGTGCC
GGTGCCGAAG TGCGCGGCGT CACCGGCATC ACGGTATTTT CCGGCATGCT GGGCGTCACA
CTGTTTGGGC TGTTCCTGAC CCCGGTGTTC TACGTCACGC TGCGCCGTAT GGTGACACGC
AAAACGCGGC AACCAGTGGC GGAATAA
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| Protein sequence | MDFSRFFIDR PIFAAVLSIL IFVGGVIAIP LLPISEYPDV VPPSVQVRAQ YPGANPKEIA
ETVATPLEEA INGVENMMYM KSVAGSDGVL VTTVTFRPGT DPDQAQVQVQ NRVAQAEARL
PEDVRRQGVT TQKQSPALTL VVHLVSPSGK YDSLYLRNYA TLKVKDELAR LPGIGQVQIF
GAGEYAMRIW LDPNKVASRG LTASDVVSAM QEQNVQVSAG QLGAEPMPTR SDYLLSINAQ
GRLQTEEEFG NIILKSGDNG EVVRLRDVAR IEMGSGSYAL RAQLNNKDAV GIGIFQAPGA
NAIELSNAVR AKMAELSTRF PDGMSWQAPY DPTVFVRDSI SSVVDTLLEA VLLVVLVVIL
FLQTWRASII PLLAVPISIV GTFAALYLLG FSLNTLSLFG LVLAIGIVVD DAIVVVENVE
RNIEEGLSPL AAAHQAMREV SGPIIAIAVV LCAVFVPMAF LSGVTGQFYK QFAVTIAIST
VISAINSLTL SPALAALLLK PHGAPKDMPS RLIDRLFGWL FRPFNRFFAS SSQRYQRGVS
RALGKRGAVF VVYVLLLCAA GVMFKTVPGG FIPTQDKLYL IGGVKMPEGA SLERTDAVIR
KMSAIGLSVD GVTDAVSFPG LNALQFTNTP NTGTVFFALE SLSTRTRSAA QINAEINAKI
SQIQEGFAFS IMPPPILGIG QGSGYSLYIQ DRAGLGYGAL QTAINTMSGA IMQTPGMGFP
ISSYQANVPQ LDAKIDRDKA KAQGVPLNAL FSTLQTYLGS SYINDFNRYG RTWKVMAQAD
GQFRDSVEDI ANLRTRNDKG EMVPIGSMVS ISTTYGPDPV IRYNGFPAAD LIGDADPRVL
SSSQAMSELT VMASKLLPNG MNIQWTDLSY QQSTQGNAAI IVFPVAVLLA FLALAALYES
WTLPLAVILI VPMTMLSALF GVWLTGGDNN VFVQVGLVVL MGLACKNAIL IVEFARELEL
QGKSIMEAAL EACRLRLRPI VMTSIAFIAG TIPLILGHGA GAEVRGVTGI TVFSGMLGVT
LFGLFLTPVF YVTLRRMVTR KTRQPVAE
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