Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spro_0278 |
Symbol | |
ID | 5607012 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Serratia proteamaculans 568 |
Kingdom | Bacteria |
Replicon accession | NC_009832 |
Strand | + |
Start bp | 317634 |
End bp | 321860 |
Gene Length | 4227 bp |
Protein Length | 1408 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640935777 |
Product | DNA-directed RNA polymerase subunit beta' |
Protein accession | YP_001476516 |
Protein GI | 157368527 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00498155 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAAAGACT TATTAAAGTT TCTGAAAGCG CAAACCAAGA CCGAAGAGTT TGACGCGATC AAGATTGCTC TGGCATCGCC AGACATGATC CGTTCCTGGT CGTTCGGCGA AGTCAAGAAG CCGGAAACCA TTAACTACCG TACGTTCAAA CCAGAACGTG ACGGCCTTTT CTGCGCCCGT ATCTTTGGGC CAGTAAAAGA CTACGAGTGC CTGTGCGGTA AGTACAAGCG CTTAAAACAC CGCGGCGTGA TTTGTGAGAA GTGCGGCGTT GAAGTGACCC AGACCAAAGT ACGCCGTGAG CGTATGGGGC ACATCGAGCT GGCTTCACCA ACTGCGCACA TCTGGTTCCT GAAATCGCTG CCATCCCGCA TCGGTTTGCT GCTGGATATG CCGCTGCGTG ACATCGAACG TGTACTGTAC TTCGAATCCT ATGTGGTTAT CGAAGGCGGT ATGACTAACC TCGAGCGTCG TCAGATCCTG ACTGAAGAGC AGTATCTGGA TGCGCTGGAA GAGTTCGGTG ATGAATTCGA CGCCAAGATG GGTGCGGAAG CTATTCAGGC CCTGTTGAAA AACATGGATC TGGAGCAAGA GTGTGAAACT CTGCGCGAAG AGCTGAACGA AACCAACTCC GAAACCAAGC GTAAGAAGCT GACCAAGCGT ATCAAGCTGC TGGAAGCGTT CGTACAGTCT GGCAACAAGC CAGAGTGGAT GATCCTGACC GTGCTGCCGG TACTGCCACC GGATCTGCGT CCGCTGGTGC CGTTGGATGG GGGTCGTTTC GCGACTTCAG ATCTGAACGA TCTGTATCGC CGCGTGATCA ACCGTAACAA CCGTCTGAAA CGCCTGCTGG ATCTGGCTGC GCCTGACATC ATCGTGCGCA ACGAAAAGCG TATGCTGCAA GAAGCGGTAG ATGCCCTGCT GGATAACGGC CGTCGCGGTC GTGCGATCAC CGGTTCCAAC AAGCGTCCTC TGAAATCTTT GGCCGATATG ATCAAAGGTA AGCAGGGTCG CTTCCGTCAG AACCTGTTGG GTAAACGTGT TGACTACTCT GGTCGTTCTG TAATCACCGT AGGTCCATAC CTGCGTCTGC ATCAGTGCGG TCTGCCTAAG AAAATGGCAC TGGAGCTGTT CAAACCGTTC ATCTACGGCA AGCTGGAACT GCGTGGCCTG GCCACCACCA TCAAAGCCGC CAAGAAAATG GTTGAGCGTG AAGAAGCTGT CGTTTGGGAC ATCCTGGACG AAGTTATCCG CGAACACCCG GTACTGCTGA ACCGTGCACC AACCCTGCAC CGTTTGGGTA TCCAGGCATT TGAACCGGTT CTGATCGAAG GTAAGGCTAT CCAGCTGCAC CCGCTGGTTT GTGCGGCATA CAACGCCGAC TTCGATGGTG ACCAAATGGC AGTACACGTT CCACTGACGC TTGAAGCTCA GCTGGAAGCG CGTGCGCTGA TGATGTCTAC CAACAACATC CTGTCACCAG CGAACGGCGA GCCAATCATC GTTCCTTCTC AGGACGTTGT ATTGGGTCTG TACTACATGA CCCGTGACTG TGTTAACGCC AAAGGCGAAG GCATGGTGTT GAGTGGCCCG AAAGAAGCGG AGCGTATTTA CCGCGCCGGT CTGGCTTCTC TGCATGCGCG TGTCAAAGTG CGTATCACCG AAGAGATCAA AAACACCGAA GGCGAGTCTG TACACCAGAC TTCGATCGTC GACACTACCG TTGGTCGCGC CATCCTGTGG ATGATCGTAC CGCGCGGTCT GCCGTATTCG ATCGTTAACC AGCCTTTGGG CAAGAAAGCT ATCTCCAAGA TGCTGAACAC CTGTTACCGC ATCCTGGGCC TGAAGCCGAC CGTTATCTTT GCTGACCAGA TCATGTACAC CGGTTTTGCT TATGCTGCCC GTTCAGGCGC GTCAGTAGGT ATCGATGACA TGGTAATCCC TGCCAAGAAA GCAGAGATCA TCGAAGAAGC AGAAACCGAA GTTGCCGAAA TCCAGGAGCA GTTCCAGTCT GGTTTGGTTA CCGCCGGCGA ACGCTACAAC AAAGTGATCG ATATCTGGGC CGCAGCGAAC GAACGTGTTG CCAAGGCAAT GATGGAAAAC TTGTCTGTTG AAGACGTCGT CAACCGTGAC GGTGTTGTTG AACAGCAGGT TTCCTTCAAC AGTATCTTTA TGATGGCCGA CTCCGGTGCG CGTGGTTCTG CAGCACAGAT TCGTCAGCTG GCCGGTATGC GTGGCCTGAT GGCCAAGCCG GATGGTTCCA TCATTGAAAC GCCAATCACC GCGAACTTCC GTGAAGGTCT GAACGTACTC CAGTACTTCA TCTCCACGCA CGGTGCTCGT AAAGGTTTGG CGGATACCGC ACTGAAAACG GCTAACTCCG GTTATCTGAC CCGTCGTCTG GTTGACGTGG CGCAGGATCT GGTGGTTACC GAGGACGACT GTGGTACTCA CAACGGCATC ATGATGACTC CGGTTATCGA AGGTGGTGAC GTTAAAGAGC CACTGCGCGA ACGTGTTCTG GGTCGTGTGA CAGCAGAAGA TATCATCAAG CCGGGTACGG CTGATATCCT GGTGCCACGT AACACCCTGC TGCACGAGAA GACTTGTGAC CTGTTGGAAG AAAACTCTGT CGACAGCGTT AAAGTCCGTT CCGTCGTTAG CTGTGAAACC GACTTTGGTG TGTGTGCAAA CTGCTATGGT CGCGACCTGG CACGTGGTCA CATCATCAAC AAAGGCGAAG CTATCGGCGT TATCGCGGCA CAGTCAATCG GTGAGCCGGG TACACAGCTG ACGATGCGTA CGTTCCACAT CGGTGGTGCG GCATCTCGTG CGGCTGCTGA ATCCAGCATC CAGGTGAAAA ACAAGGGTAC TCTGAAGCTG AGCAATGTGA AGTTCGTAAT GAACGCCGCA GGCAAGCTGG TGATCACCTC TCGTAACACC GAACTGAAGC TGATCGACGA ATTCGGCCGT ACTAAAGAAC GCTACAAAGT GCCTTACGGT TCCGTGATGG GCAAAGGCGA CGGTATGGAA GTTAACGGCG GCGAAACCGT TGCTAACTGG GATCCGCACA CCATGCCAGT TATCACCGAA GTGAGTGGTT TCATCCGCTT CGCTGATATG GTTGACGGCC AGACCATTAC CCGCCAGACC GACGAACTGA CCGGTTTGTC TTCTCTGGTA GTACTGGACA GCGCAGAGCG TACCGGTAGC GGTAAAGACC TGCGTCCGGC ACTGAAAATC GTTGATGCCA AAGGCGACGA CGTATTGATC CCAGGTACTG ATATGCCTGC TCAATACTTC CTGCCAGGTA AAGCGATTGT ACAGCTGGAA GACGGCATTC AGATCGGTGC GGGTGATACC CTGGCGCGTA TTCCTCAGGA ATCCGGCGGT ACCAAGGATA TTACCGGTGG TCTGCCACGC GTTGCGGATC TGTTCGAAGC ACGTCGTCCG AAAGAGCCGG CAATCCTGGC TGAAATCAGC GGGATTATCT CGTTCGGTAA AGAGACCAAA GGCAAACGTC GCCTGGTAAT CTCTCCACTG GACGGCAGCG ATGCGTACGA AGAGATGATT CCAAAATGGC GTCAGCTCAA CGTGTTCGAA GGTGAAGTTG TGGAACGTGG TGACGTTGTT TCTGACGGCC CAGAATCTCC ACACGACATT CTGCGTCTGC GTGGTGTGCA TGCGGTTACT CGCTACATCA CCAACGAAGT GCAGGAAGTT TACCGTCTGC AAGGCGTTAA GATTAACGAT AAACACATTG AAGTTATCGT TCGTCAGATG CTGCGTAAAG GCACCATCGT TAGCGCTGGT GGCACCGAGT TCCTGGAAGG CGAGCAGGCT GAAGTGTCTC GCGTTAAGAT TGCCAACCGT CAGCTTGCTG CTGAAGGCAA AATCGAGGCA ACCTTCTCAC GCGATCTGCT GGGTATCACC AAGGCTTCCT TGGCGACCGA GTCCTTCATC TCCGCAGCAT CGTTCCAGGA AACGACGCGC GTTCTGACCG AAGCGGCTGT TGCCGGTAAG CGTGATGAAC TGCGTGGCCT GAAAGAGAAC GTCATCGTGG GCCGTCTGAT CCCAGCCGGT ACCGGTTACG CTTATCATCA GGACCGCATG CGTCGTAAAG CACAGGGTGA AACGCCAGTT GTTCCGCAGG TGAGCGCGGA AGAAGCAACG GCTAACCTGG CTGAACTGCT CAATGCAGGC AACCTGGGTG GCGGCAACAA CGATTAA
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Protein sequence | MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERRQIL TEEQYLDALE EFGDEFDAKM GAEAIQALLK NMDLEQECET LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLSGP KEAERIYRAG LASLHARVKV RITEEIKNTE GESVHQTSIV DTTVGRAILW MIVPRGLPYS IVNQPLGKKA ISKMLNTCYR ILGLKPTVIF ADQIMYTGFA YAARSGASVG IDDMVIPAKK AEIIEEAETE VAEIQEQFQS GLVTAGERYN KVIDIWAAAN ERVAKAMMEN LSVEDVVNRD GVVEQQVSFN SIFMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHNGI MMTPVIEGGD VKEPLRERVL GRVTAEDIIK PGTADILVPR NTLLHEKTCD LLEENSVDSV KVRSVVSCET DFGVCANCYG RDLARGHIIN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGTLKL SNVKFVMNAA GKLVITSRNT ELKLIDEFGR TKERYKVPYG SVMGKGDGME VNGGETVANW DPHTMPVITE VSGFIRFADM VDGQTITRQT DELTGLSSLV VLDSAERTGS GKDLRPALKI VDAKGDDVLI PGTDMPAQYF LPGKAIVQLE DGIQIGAGDT LARIPQESGG TKDITGGLPR VADLFEARRP KEPAILAEIS GIISFGKETK GKRRLVISPL DGSDAYEEMI PKWRQLNVFE GEVVERGDVV SDGPESPHDI LRLRGVHAVT RYITNEVQEV YRLQGVKIND KHIEVIVRQM LRKGTIVSAG GTEFLEGEQA EVSRVKIANR QLAAEGKIEA TFSRDLLGIT KASLATESFI SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRKAQGETPV VPQVSAEEAT ANLAELLNAG NLGGGNND
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